Resource

Id Histone_ChIP-seq/ENCSR687FDKcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR687FDK [biosample_summary="Homo sapiens H1" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR687FDK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003042/
  • biosample_summary: Homo sapiens H1
  • date_created: 2015-09-15T20:27:04.773892+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR687FDK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment: This experiment’s alignments have been cropped to 50nt for consistency against its control experiment.
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR687FDK float

Histone_ChIP-seq_ENCSR687FDK
Histone_ChIP-seq ENCSR687FDK [biosample_summary="Homo sapiens H1" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR687FDK [1.74, 37.6]
n
23,720,478
mean
6.65
sd
6.29

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 237204780.74% 108531
chr1 1889049 0.76% 8482
chr2 2127671 0.88% 9768
chr3 1479234 0.75% 8215
chr4 1699932 0.89% 8693
chr5 1588669 0.88% 7838
chr6 1567561 0.92% 7430
chr7 1384364 0.87% 6001
chr8 1157761 0.80% 5856
chr9 980774 0.71% 4541
chr10 1248740 0.93% 4959
chr11 1125198 0.83% 5180
chr12 1256541 0.94% 5405
chr13 767173 0.67% 4080
chr14 717436 0.67% 3418
chr15 649805 0.64% 2673
chr16 544675 0.60% 2094
chr17 810183 0.97% 2206
chr18 553080 0.69% 2980
chr19 390149 0.67% 1147
chr20 460608 0.71% 1896
chr21 208574 0.45% 1057
chr22 476011 0.94% 1332
chrX 600787 0.39% 3078
chrY 36503 0.06% 202
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 108531 90 12908 218.56 143
global segment-length histogram

Files

Filename Size md5
ENCFF121MDQ.bed.gz 1.77 MB 6e76e078e42043020ad48676cc9a7726
ENCFF121MDQ.tabix.bed.gz 908.12 KB 3d1975636f6ce67d15ad8b2122c71513
ENCFF121MDQ.tabix.bed.gz.tbi 488.85 KB 4bbe6783f64ae6662f640df2986a37c3
genomic_resource.yaml 1.97 KB 5874b5e5288562dbf7543ef46e811da1
statistics/