Resource
| Id | Histone_ChIP-seq/ENCSR686PTV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR686PTV [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (115 days)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (115 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN708UXP|/analyses/ENCAN708UXP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN708UXP|/analyses/ENCAN708UXP/} has in progress subobject document {dab48e1c-f50e-40c8-ad36-ef09027c0c66|/documents/dab48e1c-f50e-40c8-ad36-ef09027c0c66/} audit_not_compliant: Processed alignments file {ENCFF367ALF|/files/ENCFF367ALF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 18577339 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR686PTV | float |
Histone_ChIP-seq_ENCSR686PTV |
Histone_ChIP-seq ENCSR686PTV [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (115 days)" and target="H3K27me3"]
|
 |
[1.77, 78.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 82449005 | 2.56% | 133647 |
| chr1 | 7856037 | 3.16% | 12259 |
| chr2 | 5436342 | 2.24% | 9172 |
| chr3 | 2823355 | 1.42% | 4935 |
| chr4 | 2472390 | 1.30% | 3266 |
| chr5 | 3459693 | 1.91% | 5463 |
| chr6 | 3137585 | 1.84% | 5391 |
| chr7 | 3584612 | 2.25% | 5560 |
| chr8 | 3130676 | 2.16% | 4831 |
| chr9 | 3719300 | 2.69% | 5431 |
| chr10 | 4350195 | 3.25% | 7380 |
| chr11 | 4749078 | 3.52% | 7680 |
| chr12 | 3128598 | 2.35% | 5078 |
| chr13 | 1349799 | 1.18% | 2333 |
| chr14 | 2292890 | 2.14% | 3640 |
| chr15 | 2375662 | 2.33% | 4195 |
| chr16 | 3697761 | 4.09% | 5445 |
| chr17 | 5285522 | 6.35% | 7669 |
| chr18 | 1144346 | 1.42% | 2175 |
| chr19 | 3795794 | 6.48% | 5175 |
| chr20 | 3419502 | 5.31% | 5291 |
| chr21 | 1121956 | 2.40% | 1862 |
| chr22 | 3198743 | 6.29% | 4855 |
| chrX | 6919169 | 4.43% | 14561 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 133647 | 185 | 16680 | 616.92 | 426 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF889GCA.bed.gz | 2.7 MB | 389f5870a09b42ccd127d8b52a16f851 |
| ENCFF889GCA.tabix.bed.gz | 1.29 MB | 14c07abe85edb029d9b9db942e369b7b |
| ENCFF889GCA.tabix.bed.gz.tbi | 269.05 KB | 9ac45d7ea784f191a7d9ae566d6640ca |
| genomic_resource.yaml | 2.23 KB | a6aa10fa24bfc0a0bf782fb2ba5d4ef4 |
| statistics/ |