Resource

Id Histone_ChIP-seq/ENCSR682GOIcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR682GOI [biosample_summary="Homo sapiens sigmoid colon tissue female adult (53 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR682GOI
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001159/
  • biosample_summary: Homo sapiens sigmoid colon tissue female adult (53 years)
  • date_created: 2017-01-24T04:33:04.982789+00:00
  • date_released: 2017-01-27
  • doi: 10.17989/ENCSR682GOI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR682GOI float

Histone_ChIP-seq_ENCSR682GOI
Histone_ChIP-seq ENCSR682GOI [biosample_summary="Homo sapiens sigmoid colon tissue female adult (53 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR682GOI [1.96, 7.11]
n
2,071,467
mean
3.39
sd
0.556

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 20714670.06% 11886
chr1 148976 0.06% 868
chr2 175338 0.07% 1022
chr3 155084 0.08% 897
chr4 159353 0.08% 906
chr5 135132 0.07% 763
chr6 117303 0.07% 695
chr7 113686 0.07% 665
chr8 111754 0.08% 643
chr9 81592 0.06% 463
chr9_KI270719v1_random 105 0.06% 1
chr10 99099 0.07% 582
chr11 88916 0.07% 520
chr12 99436 0.07% 574
chr13 72697 0.06% 429
chr14 61823 0.06% 351
chr14_GL000225v1_random 555 0.26% 4
chr15 50717 0.05% 294
chr16 45346 0.05% 245
chr17 39430 0.05% 236
chr17_GL000205v2_random 174 0.09% 1
chr17_KI270729v1_random 259 0.09% 1
chr18 54591 0.07% 313
chr19 49280 0.08% 278
chr20 34107 0.05% 203
chr21 28223 0.06% 151
chr22 13284 0.03% 77
chr22_KI270731v1_random 150 0.10% 1
chr22_KI270733v1_random 1262 0.70% 5
chrM 12962 78.23% 15
chrUn_GL000216v2 111 0.06% 1
chrUn_GL000220v1 224 0.14% 2
chrUn_GL000224v1 214 0.12% 1
chrUn_KI270337v1 120 10.70% 1
chrUn_KI270435v1 169 0.18% 1
chrUn_KI270438v1 3454 3.07% 14
chrUn_KI270466v1 635 51.50% 3
chrUn_KI270467v1 1605 40.94% 2
chrX 114055 0.07% 656
chrY 246 <0.01% 2
3327 contigs with no values (127145677 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 11886 105 4853 174.28 159
global segment-length histogram

Files

Filename Size md5
ENCFF437XKH.bed.gz 204.46 KB ac3e65eeb54f8d59b663ac6599c0f772
ENCFF437XKH.tabix.bed.gz 112.26 KB 42142bc5d2a7dc7be08a3ba6be5edd6a
ENCFF437XKH.tabix.bed.gz.tbi 106.3 KB 8c1586ea4e75d58d26e89d4d5a8ef6ac
genomic_resource.yaml 2.0 KB 56f3ac43ca60ca52ff98550a96c917b2
statistics/