Histone_ChIP-seq_ENCSR679OVD
Histone_ChIP-seq ENCSR679OVD [biosample_summary="Homo sapiens esophagus tissue male adult (34 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR679OVD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR679OVD [biosamplesummary="Homo sapiens esophagus tissue male adult (34 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN870OPP|/analyses/ENCAN870OPP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF718TIL|/files/ENCFF718TIL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17668261 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF718TIL|/files/ENCFF718TIL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF718TIL|/files/ENCFF718TIL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.55. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR679OVD | float |
Histone_ChIP-seq_ENCSR679OVD |
Histone_ChIP-seq ENCSR679OVD [biosample_summary="Homo sapiens esophagus tissue male adult (34 years)" and target="H3K27ac"]
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[1.92, 66.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF910HGC.bed.gz | 1.76 MB | 72a29b6d4ec01470154e6cfb09d4afb8 |
| ENCFF910HGC.bed.gz.dvc | 101.0 B | 81a589a01be88f1776d25de7a6e40260 |
| ENCFF910HGC.tabix.bed.gz | 809.87 KB | 5002509d6d257c5815d463340f685b73 |
| ENCFF910HGC.tabix.bed.gz.dvc | 106.0 B | efd5868253e42efa58740e962020c0a4 |
| ENCFF910HGC.tabix.bed.gz.tbi | 227.86 KB | c39fb166543e458db9a9fdc749634fda |
| ENCFF910HGC.tabix.bed.gz.tbi.dvc | 110.0 B | bbfe1f7723f67b1d44a3ed69ed9fab12 |
| genomic_resource.yaml | 3.22 KB | 75d1a86d299dc1e97d8ec5364493a0e5 |
| genomic_resource_original.yaml | 3.08 KB | 48752e9e13bca256efda7ab89c49f4a6 |
| statistics/ |