Resource

Id Histone_ChIP-seq/ENCSR678LNDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR678LND [biosample_summary="Homo sapiens liver tissue female adult (25 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR678LND
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002107/
  • biosample_summary: Homo sapiens liver tissue female adult (25 years)
  • date_created: 2015-09-15T19:52:13.954080+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR678LND
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (25 years)
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR678LND float

Histone_ChIP-seq_ENCSR678LND
Histone_ChIP-seq ENCSR678LND [biosample_summary="Homo sapiens liver tissue female adult (25 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR678LND [1.27, 89]
n
65,522,906
mean
13.8
sd
10.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 655229062.04% 65387
chr1 6524306 2.62% 6396
chr2 4787704 1.98% 4817
chr3 3978689 2.01% 4020
chr4 2607136 1.37% 2699
chr5 3205821 1.77% 3139
chr6 3544829 2.08% 3572
chr7 3093802 1.94% 3169
chr8 2669661 1.84% 2742
chr9 3280316 2.37% 3084
chr10 3167558 2.37% 3316
chr11 3591638 2.66% 3411
chr12 3278237 2.46% 3267
chr13 1456562 1.27% 1548
chr14 2121040 1.98% 2105
chr15 2256190 2.21% 2166
chr16 2587536 2.86% 2575
chr17 3492123 4.19% 3299
chr18 1367759 1.70% 1352
chr19 3053071 5.21% 3051
chr20 1782282 2.77% 1816
chr21 829066 1.77% 836
chr22 1736147 3.42% 1672
chrM 1589 9.59% 2
chrX 1089438 0.70% 1302
chrY 20406 0.04% 31
3341 contigs with no values (129060516 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 65387 195 31644 1002.08 684
global segment-length histogram

Files

Filename Size md5
ENCFF234QOT.bed.gz 1.53 MB b9329427329d567b7212f34ff2d384cb
ENCFF234QOT.tabix.bed.gz 704.25 KB 21d39bb44bea85ce2ab3deb789c2095d
ENCFF234QOT.tabix.bed.gz.tbi 217.27 KB edafdff8a4b9b5c53cfd79622ddc7687
genomic_resource.yaml 1.98 KB 4cc4db0e55005114aafc072f9b2b1819
statistics/