Resource
| Id | Histone_ChIP-seq/ENCSR676ZKW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR676ZKW [biosample_summary="Homo sapiens heart tissue male embryo (91 days)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (91 days) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN943ZIP|/analyses/ENCAN943ZIP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF457XAU|/files/ENCFF457XAU/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11512923 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR676ZKW | float |
Histone_ChIP-seq_ENCSR676ZKW |
Histone_ChIP-seq ENCSR676ZKW [biosample_summary="Homo sapiens heart tissue male embryo (91 days)" and target="H3K4me1"]
|
 |
[1.91, 22.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 81822570 | 2.54% | 101160 |
| chr1 | 8364968 | 3.36% | 10103 |
| chr2 | 7365706 | 3.04% | 8950 |
| chr3 | 6391764 | 3.22% | 7712 |
| chr4 | 4582278 | 2.41% | 5736 |
| chr5 | 5364760 | 2.96% | 6603 |
| chr6 | 5085839 | 2.98% | 6442 |
| chr7 | 4009440 | 2.52% | 5061 |
| chr8 | 3999145 | 2.76% | 4972 |
| chr9 | 3344779 | 2.42% | 4143 |
| chr10 | 4668946 | 3.49% | 5513 |
| chr11 | 4307958 | 3.19% | 5231 |
| chr12 | 3931696 | 2.95% | 4881 |
| chr13 | 2470441 | 2.16% | 3106 |
| chr14 | 2413493 | 2.25% | 2945 |
| chr15 | 3276757 | 3.21% | 3845 |
| chr16 | 1706466 | 1.89% | 2307 |
| chr17 | 2719534 | 3.27% | 3414 |
| chr18 | 2185647 | 2.72% | 2596 |
| chr19 | 989328 | 1.69% | 1464 |
| chr20 | 1660891 | 2.58% | 2107 |
| chr21 | 724056 | 1.55% | 932 |
| chr22 | 1462092 | 2.88% | 1741 |
| chrX | 774921 | 0.50% | 1314 |
| chrY | 21665 | 0.04% | 42 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 101160 | 245 | 13180 | 808.84 | 637 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF748DEV.bed.gz | 1.89 MB | f2ffdadb74f83acd6a149b781e13f976 |
| ENCFF748DEV.tabix.bed.gz | 987.34 KB | 21d69ab7f6cedec5587d7b536d8267c5 |
| ENCFF748DEV.tabix.bed.gz.tbi | 293.93 KB | 90219621925a40afb1c3f5d1bceb28a1 |
| genomic_resource.yaml | 1.96 KB | bf4f04e2f3257f2f3e991b509e48879d |
| statistics/ |