Resource
| Id | Histone_ChIP-seq/ENCSR673OPX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR673OPX [biosample_summary="Homo sapiens GM23248" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN413BWQ|/analyses/ENCAN413BWQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN413BWQ|/analyses/ENCAN413BWQ/} has in progress subobject document {8c953057-6442-46f5-87e7-719c95799736|/documents/8c953057-6442-46f5-87e7-719c95799736/} audit_warning: Processed unfiltered alignments file {ENCFF256ZQZ|/files/ENCFF256ZQZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 35182215 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR673OPX | float |
Histone_ChIP-seq_ENCSR673OPX |
Histone_ChIP-seq ENCSR673OPX [biosample_summary="Homo sapiens GM23248" and target="H3K9me3"]
|
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[1.82, 6.59] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 4412401 | 0.14% | 9767 |
| chr1 | 267858 | 0.11% | 596 |
| chr2 | 339670 | 0.14% | 789 |
| chr3 | 266569 | 0.13% | 640 |
| chr4 | 409139 | 0.22% | 938 |
| chr5 | 313812 | 0.17% | 712 |
| chr6 | 227009 | 0.13% | 512 |
| chr7 | 249263 | 0.16% | 551 |
| chr8 | 246269 | 0.17% | 558 |
| chr9 | 165989 | 0.12% | 367 |
| chr10 | 160742 | 0.12% | 373 |
| chr11 | 168830 | 0.12% | 380 |
| chr12 | 201590 | 0.15% | 431 |
| chr13 | 238519 | 0.21% | 569 |
| chr14 | 135688 | 0.13% | 314 |
| chr15 | 99276 | 0.10% | 222 |
| chr16 | 88285 | 0.10% | 181 |
| chr17 | 69107 | 0.08% | 150 |
| chr18 | 115856 | 0.14% | 272 |
| chr19 | 385356 | 0.66% | 634 |
| chr20 | 43259 | 0.07% | 98 |
| chr21 | 169701 | 0.36% | 371 |
| chr22 | 45383 | 0.09% | 95 |
| chrX | 3858 | <0.01% | 11 |
| chrY | 1373 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 9767 | 190 | 3958 | 451.77 | 396 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF982PWR.bed.gz | 188.33 KB | 33590c5735fc5520fedbcd55fd62752e |
| ENCFF982PWR.tabix.bed.gz | 99.8 KB | 85d6eac4f93f5237b670aa518eb84e4c |
| ENCFF982PWR.tabix.bed.gz.tbi | 77.56 KB | 6892d62c2ce9f87a80268ef59344bcda |
| genomic_resource.yaml | 2.38 KB | 6ce2472e0738ea80c5dbdffe25063499 |
| statistics/ |
