Resource
| Id | Histone_ChIP-seq/ENCSR673JYT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR673JYT [biosample_summary="Homo sapiens aorta tissue male adult (34 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN810UPL|/analyses/ENCAN810UPL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN810UPL|/analyses/ENCAN810UPL/} has in progress subobject document {8e59c908-8820-452a-aedf-cd33550f62b7|/documents/8e59c908-8820-452a-aedf-cd33550f62b7/} audit_not_compliant: Processed alignments file {ENCFF042NFB|/files/ENCFF042NFB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 26803128 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF042NFB|/files/ENCFF042NFB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR673JYT | float |
Histone_ChIP-seq_ENCSR673JYT |
Histone_ChIP-seq ENCSR673JYT [biosample_summary="Homo sapiens aorta tissue male adult (34 years)" and target="H3K36me3"]
|
 |
[1.74, 12.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 16000992 | 0.50% | 61915 |
| chr1 | 1564860 | 0.63% | 6019 |
| chr2 | 1224338 | 0.51% | 4907 |
| chr3 | 1088880 | 0.55% | 4252 |
| chr4 | 646317 | 0.34% | 2652 |
| chr5 | 691057 | 0.38% | 2785 |
| chr6 | 704499 | 0.41% | 2902 |
| chr7 | 710571 | 0.45% | 2859 |
| chr8 | 515292 | 0.36% | 2107 |
| chr9 | 763029 | 0.55% | 2950 |
| chr10 | 700817 | 0.52% | 2793 |
| chr11 | 865714 | 0.64% | 3305 |
| chr12 | 877538 | 0.66% | 3340 |
| chr13 | 303125 | 0.27% | 1249 |
| chr14 | 517095 | 0.48% | 2048 |
| chr15 | 595648 | 0.58% | 2378 |
| chr16 | 695824 | 0.77% | 2564 |
| chr17 | 817069 | 0.98% | 3099 |
| chr18 | 247927 | 0.31% | 1023 |
| chr19 | 1150900 | 1.96% | 3773 |
| chr20 | 528494 | 0.82% | 1962 |
| chr21 | 170326 | 0.36% | 631 |
| chr22 | 427569 | 0.84% | 1550 |
| chrX | 185841 | 0.12% | 736 |
| chrY | 8262 | 0.01% | 31 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 61915 | 130 | 3902 | 258.43 | 220 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF587NCS.bed.gz | 1.14 MB | a3a256fcd85d5312430ab47d1918bd7c |
| ENCFF587NCS.tabix.bed.gz | 592.82 KB | 8b7feb42cd44ac249273677610c703b0 |
| ENCFF587NCS.tabix.bed.gz.tbi | 184.0 KB | 01fb667f4093fff9ee7ef9b6cae4d48a |
| genomic_resource.yaml | 2.83 KB | 40554c28907078fc67b6196f5736aab0 |
| statistics/ |