Histone_ChIP-seq_ENCSR673JYT
Histone_ChIP-seq ENCSR673JYT [biosample_summary="Homo sapiens aorta tissue male adult (34 years)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR673JYT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR673JYT [biosamplesummary="Homo sapiens aorta tissue male adult (34 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN810UPL|/analyses/ENCAN810UPL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN810UPL|/analyses/ENCAN810UPL/} has in progress subobject document {8e59c908-8820-452a-aedf-cd33550f62b7|/documents/8e59c908-8820-452a-aedf-cd33550f62b7/} audit_not_compliant: Processed alignments file {ENCFF042NFB|/files/ENCFF042NFB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 26803128 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF042NFB|/files/ENCFF042NFB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR673JYT | float |
Histone_ChIP-seq_ENCSR673JYT |
Histone_ChIP-seq ENCSR673JYT [biosample_summary="Homo sapiens aorta tissue male adult (34 years)" and target="H3K36me3"]
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[1.74, 12.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF587NCS.bed.gz | 1.14 MB | a3a256fcd85d5312430ab47d1918bd7c |
| ENCFF587NCS.bed.gz.dvc | 101.0 B | 3bda91b2f2d19c987f86e2df1bd5e192 |
| ENCFF587NCS.tabix.bed.gz | 592.82 KB | 8b7feb42cd44ac249273677610c703b0 |
| ENCFF587NCS.tabix.bed.gz.dvc | 106.0 B | b728f6d5d06c6b8d6b3a9abf6c5a6d68 |
| ENCFF587NCS.tabix.bed.gz.tbi | 184.0 KB | 01fb667f4093fff9ee7ef9b6cae4d48a |
| ENCFF587NCS.tabix.bed.gz.tbi.dvc | 110.0 B | 8d945f077ff9bacc9daf204394d8bda7 |
| genomic_resource.yaml | 2.83 KB | 40554c28907078fc67b6196f5736aab0 |
| genomic_resource_original.yaml | 2.7 KB | bdec6a5c4834894ed00b396f6f724fcd |
| statistics/ |