Resource

Id Histone_ChIP-seq/ENCSR671JMQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR671JMQ [biosample_summary="Homo sapiens chorionic villus tissue embryo (16 weeks)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR671JMQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007106/
  • biosample_summary: Homo sapiens chorionic villus tissue embryo (16 weeks)
  • date_created: 2017-03-22T16:16:51.693602+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR671JMQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR671JMQ float

Histone_ChIP-seq_ENCSR671JMQ
Histone_ChIP-seq ENCSR671JMQ [biosample_summary="Homo sapiens chorionic villus tissue embryo (16 weeks)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR671JMQ [1.47, 12.1]
n
16,308,723
mean
3.81
sd
0.859

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 163087230.51% 69649
chr1 435194 0.17% 2083
chr1_KI270706v1_random 275 0.16% 2
chr1_KI270707v1_random 433 1.35% 1
chr1_KI270708v1_random 720 0.56% 4
chr1_KI270709v1_random 3015 4.51% 12
chr1_KI270710v1_random 376 0.94% 2
chr2 964233 0.40% 4473
chr2_KI270716v1_random 340 0.22% 2
chr3 861170 0.43% 3934
chr3_GL000221v1_random 129 0.08% 1
chr4 1094721 0.58% 4956
chr4_GL000008v2_random 4012 1.91% 4
chr5 1039845 0.57% 4470
chr5_GL000208v1_random 5287 5.70% 18
chr6 621239 0.36% 2804
chr7 1167380 0.73% 4680
chr8 1193911 0.82% 5120
chr9 464938 0.34% 2071
chr9_KI270719v1_random 3366 1.90% 14
chr9_KI270720v1_random 794 2.03% 4
chr10 822378 0.61% 3409
chr11 828609 0.61% 3486
chr12 846338 0.64% 3544
chr13 1120576 0.98% 4864
chr14 626358 0.59% 2801
chr14_GL000009v2_random 2008 1.00% 12
chr14_GL000194v1_random 2634 1.38% 10
chr14_GL000225v1_random 30557 14.47% 99
chr14_KI270722v1_random 3457 1.78% 14
chr14_KI270723v1_random 2151 5.64% 8
chr14_KI270724v1_random 2176 5.50% 8
chr14_KI270725v1_random 2018 1.17% 11
chr15 304707 0.30% 1263
chr16 544935 0.60% 2365
chr16_KI270728v1_random 119 0.01% 1
chr17 257497 0.31% 1108
chr17_GL000205v2_random 1706 0.92% 6
chr17_KI270729v1_random 19604 6.98% 62
chr17_KI270730v1_random 8394 7.46% 21
chr18 592541 0.74% 2619
chr19 684333 1.17% 2362
chr20 269949 0.42% 1193
chr21 778767 1.67% 2933
chr22 153421 0.30% 635
chr22_KI270732v1_random 639 1.54% 4
chr22_KI270733v1_random 2711 1.51% 13
chr22_KI270735v1_random 3374 7.88% 13
chr22_KI270736v1_random 45378 24.94% 114
chr22_KI270738v1_random 3042 3.06% 13
chr22_KI270739v1_random 175 0.24% 1
chrUn_GL000214v1 864 0.63% 2
chrUn_GL000216v2 19523 11.05% 65
chrUn_GL000218v1 1472 0.91% 8
chrUn_GL000219v1 681 0.38% 2
chrUn_GL000220v1 271 0.17% 2
chrUn_GL000224v1 9239 5.14% 26
chrUn_KI270311v1 209 1.69% 1
chrUn_KI270333v1 647 23.97% 5
chrUn_KI270337v1 660 58.88% 3
chrUn_KI270417v1 444 21.73% 2
chrUn_KI270429v1 579 42.54% 1
chrUn_KI270435v1 5436 5.85% 21
chrUn_KI270438v1 19019 16.91% 53
chrUn_KI270442v1 72984 18.62% 191
chrUn_KI270448v1 1909 23.89% 6
chrUn_KI270466v1 663 53.77% 3
chrUn_KI270467v1 1592 40.61% 2
chrUn_KI270468v1 194 4.78% 1
chrUn_KI270507v1 1006 18.79% 4
chrUn_KI270508v1 562 28.81% 2
chrUn_KI270509v1 645 27.83% 1
chrUn_KI270510v1 925 38.30% 3
chrUn_KI270511v1 1557 19.16% 5
chrUn_KI270512v1 963 4.24% 5
chrUn_KI270515v1 2221 34.92% 4
chrUn_KI270516v1 816 62.77% 1
chrUn_KI270517v1 817 25.12% 1
chrUn_KI270518v1 552 25.25% 2
chrUn_KI270519v1 20555 14.88% 70
chrUn_KI270521v1 497 6.50% 2
chrUn_KI270522v1 522 9.20% 3
chrUn_KI270538v1 7803 8.55% 23
chrUn_KI270584v1 1247 27.63% 4
chrUn_KI270587v1 284 9.57% 1
chrUn_KI270588v1 592 9.61% 2
chrUn_KI270589v1 2502 5.63% 4
chrUn_KI270590v1 1965 41.94% 5
chrUn_KI270591v1 1518 26.19% 3
chrUn_KI270593v1 310 10.19% 2
chrUn_KI270742v1 1149 0.62% 3
chrUn_KI270744v1 3720 2.21% 14
chrUn_KI270746v1 4027 6.06% 20
chrUn_KI270747v1 584 0.29% 1
chrUn_KI270749v1 719 0.45% 4
chrUn_KI270750v1 8052 5.41% 20
chrUn_KI270751v1 4025 2.67% 15
chrUn_KI270753v1 113 0.18% 1
chrUn_KI270754v1 534 1.33% 4
chrUn_KI270756v1 945 1.19% 4
chrUn_KI270757v1 6777 9.51% 20
chrX 201337 0.13% 1054
chrY 70566 0.12% 301
3264 contigs with no values (120354127 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69649 100 3386 234.16 198
global segment-length histogram

Files

Filename Size md5
ENCFF183ZWD.bed.gz 1.09 MB 11b62e8e877393189518fd5393ab234e
ENCFF183ZWD.tabix.bed.gz 596.38 KB 81fbc6b1ca742b9d749edc3bfc381649
ENCFF183ZWD.tabix.bed.gz.tbi 250.3 KB a89a3e1d8f7eb58336dec079a2f61c3f
genomic_resource.yaml 1.99 KB 4b56a9b0dd645f014c5bcc3d1f490111
statistics/