Histone_ChIP-seq_ENCSR670UJZ
Histone_ChIP-seq ENCSR670UJZ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR670UJZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR670UJZ [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN098KJZ|/analyses/ENCAN098KJZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF117TRQ|/files/ENCFF117TRQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF117TRQ|/files/ENCFF117TRQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.67. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR670UJZ | float |
Histone_ChIP-seq_ENCSR670UJZ |
Histone_ChIP-seq ENCSR670UJZ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K4me1"]
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[1.63, 14] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF409VLM.bed.gz | 3.39 MB | 6a8f655dffcfa848988da1b77b053c2f |
| ENCFF409VLM.bed.gz.dvc | 101.0 B | d3c5b4fb7303e5182a8c1b31ad79f9db |
| ENCFF409VLM.tabix.bed.gz | 1.49 MB | b67816677df3ecea18bf19aca5678d70 |
| ENCFF409VLM.tabix.bed.gz.dvc | 107.0 B | 76bb216464477097ba1471060466fb6a |
| ENCFF409VLM.tabix.bed.gz.tbi | 318.43 KB | 187f08efc3e4f2edc5e67de28127172e |
| ENCFF409VLM.tabix.bed.gz.tbi.dvc | 110.0 B | 806dd9574defd657dcf0132a5f5d0f22 |
| genomic_resource.yaml | 2.79 KB | f8e71f52f104a365ff19703368aef146 |
| genomic_resource_original.yaml | 2.65 KB | a10355d99a5b2e79c1a4139b697c5b49 |
| statistics/ |