Resource
| Id | Histone_ChIP-seq/ENCSR670UJZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR670UJZ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN098KJZ|/analyses/ENCAN098KJZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF117TRQ|/files/ENCFF117TRQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF117TRQ|/files/ENCFF117TRQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.67. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR670UJZ | float |
Histone_ChIP-seq_ENCSR670UJZ |
Histone_ChIP-seq ENCSR670UJZ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K4me1"]
|
 |
[1.63, 14] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 226155709 | 7.03% | 141333 |
| chr1 | 22233817 | 8.93% | 13638 |
| chr2 | 18657122 | 7.70% | 11591 |
| chr3 | 16497946 | 8.32% | 10009 |
| chr4 | 10021820 | 5.27% | 6658 |
| chr5 | 13194556 | 7.27% | 8324 |
| chr6 | 13026104 | 7.63% | 8406 |
| chr7 | 10837703 | 6.80% | 7168 |
| chr8 | 10200553 | 7.03% | 6526 |
| chr9 | 9598409 | 6.94% | 5860 |
| chr10 | 12551013 | 9.38% | 7436 |
| chr11 | 11760253 | 8.71% | 7139 |
| chr12 | 11419980 | 8.57% | 6923 |
| chr13 | 5973197 | 5.22% | 3725 |
| chr14 | 7371100 | 6.89% | 4485 |
| chr15 | 8242233 | 8.08% | 4955 |
| chr16 | 6961067 | 7.71% | 4426 |
| chr17 | 10156015 | 12.20% | 6067 |
| chr18 | 4951931 | 6.16% | 3250 |
| chr19 | 6327505 | 10.79% | 4162 |
| chr20 | 6125290 | 9.50% | 3714 |
| chr21 | 2262177 | 4.84% | 1493 |
| chr22 | 5110373 | 10.06% | 2969 |
| chrX | 2577571 | 1.65% | 2316 |
| chrY | 97974 | 0.17% | 93 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 141333 | 255 | 54435 | 1600.16 | 1121 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF409VLM.bed.gz | 3.39 MB | 6a8f655dffcfa848988da1b77b053c2f |
| ENCFF409VLM.tabix.bed.gz | 1.49 MB | b67816677df3ecea18bf19aca5678d70 |
| ENCFF409VLM.tabix.bed.gz.tbi | 318.43 KB | 187f08efc3e4f2edc5e67de28127172e |
| genomic_resource.yaml | 2.79 KB | f8e71f52f104a365ff19703368aef146 |
| statistics/ |