| Id: | Histone_ChIP-seq/ENCSR668QQL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR668QQL [biosamplesummary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN074UTU|/analyses/ENCAN074UTU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF978FLE|/files/ENCFF978FLE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF978FLE|/files/ENCFF978FLE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.61. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR668QQL | float |
Histone_ChIP-seq_ENCSR668QQL |
Histone_ChIP-seq ENCSR668QQL [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
|
 |
[1.74, 84.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF424XFG.bed.gz | 1.03 MB | 21c0a6db7456c45b53386487cad5df95 |
| ENCFF424XFG.bed.gz.dvc | 101.0 B | 8351fb0c3b31448f5b563d4f317605ac |
| ENCFF424XFG.tabix.bed.gz | 460.29 KB | 382b0f0f717f819481fde73d9ad911ca |
| ENCFF424XFG.tabix.bed.gz.dvc | 106.0 B | 3ac75e6405429638d74cc392ed52a49a |
| ENCFF424XFG.tabix.bed.gz.tbi | 224.97 KB | 8c4040fce80d1b0abe78ae5a34b449f8 |
| ENCFF424XFG.tabix.bed.gz.tbi.dvc | 110.0 B | 98849b2b7aad4fe6a53b28e0daafe9b5 |
| genomic_resource.yaml | 3.04 KB | 4dec809b0607890b9846b5d5f76e0303 |
| genomic_resource_original.yaml | 2.85 KB | cb22590a40e24c78f1b1b41ced43885c |
| statistics/ |