Histone_ChIP-seq_ENCSR668NXG
Histone_ChIP-seq ENCSR668NXG [biosample_summary="Homo sapiens skeletal muscle tissue tissue male adult (54 years)" and target="H3K4me1"]
×
| Id: | Histone_ChIP-seq/ENCSR668NXG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR668NXG [biosamplesummary="Homo sapiens skeletal muscle tissue tissue male adult (54 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN904HCV|/analyses/ENCAN904HCV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF073VEQ|/files/ENCFF073VEQ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 24726074 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF073VEQ|/files/ENCFF073VEQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF073VEQ|/files/ENCFF073VEQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.76. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR668NXG | float |
Histone_ChIP-seq_ENCSR668NXG |
Histone_ChIP-seq ENCSR668NXG [biosample_summary="Homo sapiens skeletal muscle tissue tissue male adult (54 years)" and target="H3K4me1"]
|
|
[1.53, 40.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF617ELX.bed.gz | 3.01 MB | b247d822c0f2a4510826b6206b927636 |
| ENCFF617ELX.bed.gz.dvc | 101.0 B | a93d8323055d29cdeb0f22a9c3e1c9b5 |
| ENCFF617ELX.tabix.bed.gz | 1.45 MB | 63f0e0073787c4f71ed303cae9291496 |
| ENCFF617ELX.tabix.bed.gz.dvc | 107.0 B | eb900c53e81f7f632897551d7c45116d |
| ENCFF617ELX.tabix.bed.gz.tbi | 321.16 KB | ce7bc67c159dbb5075dddbf1637b199e |
| ENCFF617ELX.tabix.bed.gz.tbi.dvc | 110.0 B | 223b5d1d349c7ca58a1fb4a7490af2e5 |
| genomic_resource.yaml | 3.29 KB | 6d7ccefad955562faba6f690e3e4a1e7 |
| genomic_resource_original.yaml | 3.14 KB | e81e1b00b0fa1f26ab76385ffe462eaf |
| statistics/ |