Resource

Id Histone_ChIP-seq/ENCSR668LDDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR668LDD [biosample_summary="Homo sapiens K562" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR668LDD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002067/
  • biosample_summary: Homo sapiens K562
  • date_created: 2014-10-24T16:22:22.183276+00:00
  • date_released: 2016-11-08
  • doi: 10.17989/ENCSR668LDD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR668LDD float

Histone_ChIP-seq_ENCSR668LDD
Histone_ChIP-seq ENCSR668LDD [biosample_summary="Homo sapiens K562" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR668LDD [1.6, 78.9]
n
31,860,719
mean
27.2
sd
13.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 318607190.99% 21445
chr1 3219894 1.29% 2110
chr2 2090772 0.86% 1400
chr3 1752101 0.88% 1139
chr4 1216582 0.64% 770
chr5 1413436 0.78% 876
chr6 2008997 1.18% 1266
chr7 1538600 0.97% 1038
chr8 1139448 0.79% 755
chr9 1241718 0.90% 853
chr10 1272613 0.95% 856
chr11 1694685 1.25% 1085
chr12 1714068 1.29% 1138
chr13 568085 0.50% 393
chr14 991065 0.93% 696
chr15 1002654 0.98% 665
chr16 1370653 1.52% 953
chr17 1872007 2.25% 1246
chr18 463517 0.58% 338
chr19 2375352 4.05% 1779
chr20 814407 1.26% 568
chr21 346700 0.74% 250
chr22 709121 1.40% 517
chrX 1042810 0.67% 751
chrY 1434 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21445 220 11227 1485.69 1181
global segment-length histogram

Files

Filename Size md5
ENCFF737AMS.bed.gz 600.6 KB adacb3368b5892230c64eb18e503c7ac
ENCFF737AMS.tabix.bed.gz 252.17 KB 274894459c46a28bbd632a85ee355b07
ENCFF737AMS.tabix.bed.gz.tbi 126.57 KB a430ea8c708fd12caf12f9f9991de4b3
genomic_resource.yaml 1.36 KB d700047e685529616a5b59acb132b52d
statistics/