Resource
| Id | Histone_ChIP-seq/ENCSR668GKQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR668GKQ [biosample_summary="Homo sapiens mammary epithelial cell female adult (18 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (18 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN620HLN|/analyses/ENCAN620HLN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF918ALY|/files/ENCFF918ALY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF918ALY|/files/ENCFF918ALY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.81. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR668GKQ | float |
Histone_ChIP-seq_ENCSR668GKQ |
Histone_ChIP-seq ENCSR668GKQ [biosample_summary="Homo sapiens mammary epithelial cell female adult (18 years)" and target="H3K9me3"]
|
 |
[1.82, 14.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 56185044 | 1.75% | 57348 |
| chr1 | 1173032 | 0.47% | 1273 |
| chr2 | 4231013 | 1.75% | 4608 |
| chr3 | 1860609 | 0.94% | 2116 |
| chr4 | 2299026 | 1.21% | 2582 |
| chr5 | 2831727 | 1.56% | 3062 |
| chr6 | 2457908 | 1.44% | 2768 |
| chr7 | 3408265 | 2.14% | 3586 |
| chr8 | 3449826 | 2.38% | 3700 |
| chr9 | 1142365 | 0.83% | 1234 |
| chr10 | 1644411 | 1.23% | 1846 |
| chr11 | 1516721 | 1.12% | 1727 |
| chr12 | 1418481 | 1.06% | 1511 |
| chr13 | 4568049 | 3.99% | 4698 |
| chr14 | 3913292 | 3.66% | 3820 |
| chr15 | 2884590 | 2.83% | 2453 |
| chr16 | 2363444 | 2.62% | 2376 |
| chr17 | 1031238 | 1.24% | 1018 |
| chr18 | 2090408 | 2.60% | 2200 |
| chr19 | 3313905 | 5.65% | 2504 |
| chr20 | 871281 | 1.35% | 934 |
| chr21 | 4096972 | 8.77% | 3336 |
| chr22 | 1239151 | 2.44% | 1097 |
| chrX | 2379330 | 1.52% | 2899 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 57348 | 320 | 20458 | 979.72 | 821 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF697IGV.bed.gz | 1.0 MB | df92aee74883be15feb194dbdc77297c |
| ENCFF697IGV.tabix.bed.gz | 544.42 KB | 8f65b48e63609d8f76935da9cc3385c7 |
| ENCFF697IGV.tabix.bed.gz.tbi | 151.58 KB | 5ccbd80d695111bc737ac8cf01db018d |
| genomic_resource.yaml | 2.81 KB | 3f30c50102e3febb88919acab7a6b23e |
| statistics/ |