Histone_ChIP-seq_ENCSR668GKQ
Histone_ChIP-seq ENCSR668GKQ [biosample_summary="Homo sapiens mammary epithelial cell female adult (18 years)" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR668GKQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR668GKQ [biosamplesummary="Homo sapiens mammary epithelial cell female adult (18 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (18 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN620HLN|/analyses/ENCAN620HLN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF918ALY|/files/ENCFF918ALY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF918ALY|/files/ENCFF918ALY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.81. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR668GKQ | float |
Histone_ChIP-seq_ENCSR668GKQ |
Histone_ChIP-seq ENCSR668GKQ [biosample_summary="Homo sapiens mammary epithelial cell female adult (18 years)" and target="H3K9me3"]
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[1.82, 14.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF697IGV.bed.gz | 1.0 MB | df92aee74883be15feb194dbdc77297c |
| ENCFF697IGV.bed.gz.dvc | 101.0 B | 680739ad3df7b87e807ade37dc5d1951 |
| ENCFF697IGV.tabix.bed.gz | 544.42 KB | 8f65b48e63609d8f76935da9cc3385c7 |
| ENCFF697IGV.tabix.bed.gz.dvc | 106.0 B | 93837685e1e2cf648f89ea242d86c245 |
| ENCFF697IGV.tabix.bed.gz.tbi | 151.58 KB | 5ccbd80d695111bc737ac8cf01db018d |
| ENCFF697IGV.tabix.bed.gz.tbi.dvc | 110.0 B | c0ccfa9e7ba6c6768c6d09012f245b4d |
| genomic_resource.yaml | 2.81 KB | 3f30c50102e3febb88919acab7a6b23e |
| genomic_resource_original.yaml | 2.67 KB | 9bd946457b4c10590e02bb39290f7760 |
| statistics/ |