Histone_ChIP-seq_ENCSR668GBL
Histone_ChIP-seq ENCSR668GBL [biosample_summary="Homo sapiens spleen tissue female adult (51 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR668GBL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR668GBL [biosamplesummary="Homo sapiens spleen tissue female adult (51 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (51 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN159POY|/analyses/ENCAN159POY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN159POY|/analyses/ENCAN159POY/} has in progress subobject document {21b78a1e-6133-408a-ab2f-4a09f1313913|/documents/21b78a1e-6133-408a-ab2f-4a09f1313913/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF772PQB|/files/ENCFF772PQB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF772PQB|/files/ENCFF772PQB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.95. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR668GBL | float |
Histone_ChIP-seq_ENCSR668GBL |
Histone_ChIP-seq ENCSR668GBL [biosample_summary="Homo sapiens spleen tissue female adult (51 years)" and target="H3K27ac"]
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[1.58, 74.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF214NTL.bed.gz | 1.86 MB | 062a513a34d087df5726c43c2207e41d |
| ENCFF214NTL.bed.gz.dvc | 101.0 B | a7edc89473b96489463bca81cfb9926a |
| ENCFF214NTL.tabix.bed.gz | 814.91 KB | ab783c01acd65bc66c82452545e67429 |
| ENCFF214NTL.tabix.bed.gz.dvc | 106.0 B | d3e58ea09f424712c4761025f8d34957 |
| ENCFF214NTL.tabix.bed.gz.tbi | 247.39 KB | 61fe3ac3bd673a2001e7782fd69ab219 |
| ENCFF214NTL.tabix.bed.gz.tbi.dvc | 110.0 B | 899f938cefd0615175b7b00901b6e04e |
| genomic_resource.yaml | 2.98 KB | 8e4b29a7a0f06b329f697f4fa97d64bb |
| genomic_resource_original.yaml | 2.84 KB | 1616d55e047c8d39d1ffc31ea732f668 |
| statistics/ |