Resource

Id Histone_ChIP-seq/ENCSR666TFScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR666TFS [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR666TFS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001606/
  • biosample_summary: Homo sapiens foreskin keratinocyte male newborn
  • date_created: 2015-09-15T20:26:34.792770+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR666TFS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR666TFS float

Histone_ChIP-seq_ENCSR666TFS
Histone_ChIP-seq ENCSR666TFS [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR666TFS [1.74, 70.4]
n
61,680,452
mean
9.75
sd
7.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 616804521.92% 72273
chr1 6252674 2.51% 7192
chr2 4908419 2.03% 5931
chr3 4103564 2.07% 4812
chr4 2947706 1.55% 3602
chr5 3192069 1.76% 3770
chr6 3891822 2.28% 4448
chr7 2913116 1.83% 3452
chr8 2524011 1.74% 3037
chr9 2477109 1.79% 2953
chr10 2862024 2.14% 3403
chr11 3158661 2.34% 3623
chr12 3521758 2.64% 3895
chr13 1457631 1.27% 1763
chr14 2056615 1.92% 2448
chr15 2086464 2.05% 2463
chr16 1923473 2.13% 2287
chr17 2907591 3.49% 3251
chr18 1335517 1.66% 1559
chr19 2357615 4.02% 2618
chr20 1596072 2.48% 1831
chr21 819815 1.76% 927
chr22 1185604 2.33% 1395
chrX 1111327 0.71% 1498
chrY 89795 0.16% 115
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 72273 190 16254 853.44 554
global segment-length histogram

Files

Filename Size md5
ENCFF977OGU.bed.gz 1.65 MB 01715e6261ea1034ab729d48f341e336
ENCFF977OGU.tabix.bed.gz 780.65 KB 6a6bce7274b9f704c1d175c15b1f1d11
ENCFF977OGU.tabix.bed.gz.tbi 251.38 KB d876b43e923b98cdaf1fc0da894cdb68
genomic_resource.yaml 1.47 KB 790474d3724cb0e8935d99ce88ff6616
statistics/