Resource
| Id | Histone_ChIP-seq/ENCSR664RRY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR664RRY [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (49 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (49 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN230NGZ|/analyses/ENCAN230NGZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF580KIW|/files/ENCFF580KIW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 27974035 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR664RRY | float |
Histone_ChIP-seq_ENCSR664RRY |
Histone_ChIP-seq ENCSR664RRY [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (49 years)" and target="H3K4me1"]
|
 |
[1.22, 54.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 18528764 | 0.58% | 57168 |
| chr1 | 1841219 | 0.74% | 5531 |
| chr1_KI270713v1_random | 419 | 1.03% | 1 |
| chr2 | 1421479 | 0.59% | 4476 |
| chr3 | 1173069 | 0.59% | 3633 |
| chr4 | 483080 | 0.25% | 1646 |
| chr5 | 910252 | 0.50% | 2878 |
| chr6 | 853793 | 0.50% | 2801 |
| chr7 | 776545 | 0.49% | 2496 |
| chr8 | 698287 | 0.48% | 2243 |
| chr9 | 838902 | 0.61% | 2553 |
| chr10 | 1135445 | 0.85% | 3442 |
| chr11 | 1135267 | 0.84% | 3430 |
| chr12 | 940104 | 0.71% | 2869 |
| chr13 | 338596 | 0.30% | 1117 |
| chr14 | 639871 | 0.60% | 1947 |
| chr14_GL000225v1_random | 1786 | 0.85% | 7 |
| chr14_KI270722v1_random | 201 | 0.10% | 1 |
| chr15 | 697461 | 0.68% | 2117 |
| chr16 | 729967 | 0.81% | 2227 |
| chr17 | 1173238 | 1.41% | 3371 |
| chr17_GL000205v2_random | 474 | 0.26% | 1 |
| chr18 | 304914 | 0.38% | 1043 |
| chr19 | 883600 | 1.51% | 2514 |
| chr20 | 596945 | 0.93% | 1849 |
| chr21 | 201049 | 0.43% | 662 |
| chr22 | 546866 | 1.08% | 1577 |
| chr22_KI270733v1_random | 145 | 0.08% | 1 |
| chrM | 836 | 5.05% | 2 |
| chrUn_GL000219v1 | 251 | 0.14% | 1 |
| chrUn_GL000224v1 | 228 | 0.13% | 1 |
| chrUn_KI270442v1 | 160 | 0.04% | 1 |
| chrX | 204315 | 0.13% | 730 |
| 3334 contigs with no values (184725648 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 57168 | 140 | 3874 | 324.11 | 269 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF750AFS.bed.gz | 1005.91 KB | e983045183af888141346df88aa4e07d |
| ENCFF750AFS.tabix.bed.gz | 529.2 KB | 8452fc5bc149272d01ad30f5ed7b0abe |
| ENCFF750AFS.tabix.bed.gz.tbi | 234.0 KB | 7e0f33554ce2ed15dfa992aa747b0711 |
| genomic_resource.yaml | 2.17 KB | d0b4ca1888a5b7ac589ad911bde572dc |
| statistics/ |