Resource

Id Histone_ChIP-seq/ENCSR661MUScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR661MUS [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR661MUS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0011020/
  • biosample_summary: Homo sapiens neural progenitor cell originated from H9
  • date_created: 2016-04-11T19:01:18.400983+00:00
  • date_released: 2016-06-14
  • doi: 10.17989/ENCSR661MUS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR661MUS float

Histone_ChIP-seq_ENCSR661MUS
Histone_ChIP-seq ENCSR661MUS [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR661MUS [1.26, 37.7]
n
51,302,186
mean
15
sd
7.29

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 513021861.59% 32317
chr1 4939216 1.98% 3084
chr2 3564221 1.47% 2259
chr3 2875526 1.45% 1761
chr4 2204280 1.16% 1341
chr5 2526120 1.39% 1578
chr6 3148688 1.84% 1847
chr7 2473502 1.55% 1569
chr8 1962550 1.35% 1250
chr9 2073305 1.50% 1319
chr10 2200314 1.64% 1427
chr11 2708405 2.00% 1701
chr12 2672861 2.01% 1631
chr13 1161532 1.02% 718
chr14 1756414 1.64% 1074
chr15 1696465 1.66% 1051
chr16 1859317 2.06% 1227
chr17 2771204 3.33% 1705
chr18 996783 1.24% 635
chr19 3047599 5.20% 2055
chr20 1340180 2.08% 893
chr21 483921 1.04% 347
chr22 1021453 2.01% 715
chrX 1817087 1.16% 1128
chrY 1243 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32317 200 20662 1587.47 1223
global segment-length histogram

Files

Filename Size md5
ENCFF958HIE.bed.gz 919.07 KB 9ecf292841e8a6fd726036074c1b2184
ENCFF958HIE.tabix.bed.gz 379.28 KB f51a1e4d6736d3f5f9d69cc83ce50d3c
ENCFF958HIE.tabix.bed.gz.tbi 189.34 KB 2773f36f0a957d1036aeca07a02dfce4
genomic_resource.yaml 1.52 KB e5ffbcabd90116cb9891677fdc5eef87
statistics/