Resource
| Id | Histone_ChIP-seq/ENCSR659KFN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR659KFN [biosample_summary="Homo sapiens BLaER1 12 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: 12 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR659KFN | float |
Histone_ChIP-seq_ENCSR659KFN |
Histone_ChIP-seq ENCSR659KFN [biosample_summary="Homo sapiens BLaER1 12 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me1"]
|
 |
[1.33, 23.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 254598216 | 7.91% | 204049 |
| chr1 | 23750573 | 9.54% | 18786 |
| chr1_KI270706v1_random | 1124 | 0.64% | 4 |
| chr1_KI270713v1_random | 9077 | 22.28% | 13 |
| chr1_KI270714v1_random | 1184 | 2.84% | 2 |
| chr2 | 20017285 | 8.26% | 16316 |
| chr3 | 14029729 | 7.08% | 12230 |
| chr3_GL000221v1_random | 3952 | 2.54% | 7 |
| chr4 | 9557316 | 5.02% | 8546 |
| chr4_GL000008v2_random | 445 | 0.21% | 1 |
| chr5 | 12519156 | 6.90% | 10255 |
| chr6 | 12648718 | 7.41% | 10835 |
| chr7 | 12798582 | 8.03% | 10689 |
| chr8 | 12007436 | 8.27% | 9309 |
| chr9 | 11218495 | 8.11% | 8781 |
| chr9_KI270719v1_random | 432 | 0.24% | 1 |
| chr9_KI270720v1_random | 418 | 1.07% | 1 |
| chr10 | 13339257 | 9.97% | 10598 |
| chr11 | 12209676 | 9.04% | 9624 |
| chr11_KI270721v1_random | 1999 | 1.99% | 5 |
| chr12 | 11520369 | 8.64% | 9316 |
| chr13 | 5851922 | 5.12% | 5286 |
| chr14 | 8371508 | 7.82% | 6487 |
| chr14_GL000009v2_random | 2015 | 1.00% | 3 |
| chr14_GL000194v1_random | 2340 | 1.22% | 3 |
| chr14_GL000225v1_random | 1653 | 0.78% | 4 |
| chr14_KI270723v1_random | 1153 | 3.03% | 3 |
| chr14_KI270724v1_random | 421 | 1.06% | 1 |
| chr14_KI270726v1_random | 2791 | 6.38% | 5 |
| chr15 | 8383457 | 8.22% | 6734 |
| chr15_KI270727v1_random | 3772 | 0.84% | 6 |
| chr16 | 11224593 | 12.43% | 8167 |
| chr16_KI270728v1_random | 2570 | 0.14% | 5 |
| chr17 | 14253356 | 17.12% | 10057 |
| chr17_GL000205v2_random | 14460 | 7.79% | 13 |
| chr17_KI270729v1_random | 1278 | 0.46% | 2 |
| chr18 | 5240130 | 6.52% | 4395 |
| chr19 | 10429461 | 17.79% | 7703 |
| chr20 | 8779861 | 13.62% | 6593 |
| chr21 | 3810850 | 8.16% | 2849 |
| chr22 | 7677046 | 15.11% | 5141 |
| chr22_KI270731v1_random | 2054 | 1.36% | 3 |
| chr22_KI270733v1_random | 3967 | 2.21% | 7 |
| chr22_KI270734v1_random | 1773 | 1.07% | 6 |
| chrUn_GL000195v1 | 2528 | 1.38% | 7 |
| chrUn_GL000214v1 | 1538 | 1.12% | 3 |
| chrUn_GL000216v2 | 3908 | 2.21% | 5 |
| chrUn_GL000219v1 | 11484 | 6.41% | 19 |
| chrUn_GL000220v1 | 437 | 0.27% | 1 |
| chrUn_GL000224v1 | 1196 | 0.67% | 2 |
| chrUn_KI270438v1 | 2713 | 2.41% | 5 |
| chrUn_KI270442v1 | 1425 | 0.36% | 2 |
| chrUn_KI270519v1 | 3777 | 2.73% | 6 |
| chrUn_KI270584v1 | 269 | 5.96% | 1 |
| chrUn_KI270742v1 | 260 | 0.14% | 1 |
| chrUn_KI270743v1 | 331 | 0.16% | 1 |
| chrUn_KI270744v1 | 5450 | 3.23% | 6 |
| chrUn_KI270751v1 | 939 | 0.62% | 1 |
| chrUn_KI270753v1 | 3268 | 5.19% | 5 |
| chrUn_KI270755v1 | 322 | 0.88% | 1 |
| chrX | 4854558 | 3.11% | 5180 |
| chrY | 6159 | 0.01% | 11 |
| 3305 contigs with no values (121648080 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 204049 | 250 | 51649 | 1247.73 | 733 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF831KDC.bed.gz | 4.44 MB | 6819b16d147a780122684b9e0e6969f3 |
| ENCFF831KDC.tabix.bed.gz | 2.05 MB | 921405e90f953ffcd6e6ff4e54156a41 |
| ENCFF831KDC.tabix.bed.gz.tbi | 419.09 KB | bdbe69e7ba76d504d79c7196b64d59d0 |
| genomic_resource.yaml | 3.12 KB | f3e9775f451ac9d0ceb4994516f9f38b |
| statistics/ |