Resource

Id Histone_ChIP-seq/ENCSR658VPFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR658VPF [biosample_summary="Homo sapiens thyroid gland tissue female adult (53 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR658VPF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002046/
  • biosample_summary: Homo sapiens thyroid gland tissue female adult (53 years)
  • date_created: 2016-10-22T16:07:30.737839+00:00
  • date_released: 2016-11-05
  • doi: 10.17989/ENCSR658VPF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR658VPF float

Histone_ChIP-seq_ENCSR658VPF
Histone_ChIP-seq ENCSR658VPF [biosample_summary="Homo sapiens thyroid gland tissue female adult (53 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR658VPF [1.25, 6.79]
n
1,056,791
mean
3.41
sd
0.617

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 10567910.03% 5411
chr1 58472 0.02% 319
chr2 73413 0.03% 433
chr3 60994 0.03% 336
chr4 80742 0.04% 408
chr4_GL000008v2_random 242 0.12% 1
chr5 67979 0.04% 362
chr5_GL000208v1_random 257 0.28% 1
chr6 54407 0.03% 302
chr7 55907 0.04% 294
chr8 55834 0.04% 297
chr9 36139 0.03% 192
chr9_KI270719v1_random 342 0.19% 2
chr10 49459 0.04% 270
chr11 38049 0.03% 211
chr12 50568 0.04% 242
chr13 36655 0.03% 195
chr14 21286 0.02% 114
chr14_GL000194v1_random 147 0.08% 1
chr14_GL000225v1_random 292 0.14% 1
chr14_KI270722v1_random 172 0.09% 1
chr14_KI270725v1_random 120 0.07% 1
chr15 24320 0.02% 127
chr16 20737 0.02% 100
chr17 13621 0.02% 72
chr17_GL000205v2_random 254 0.14% 1
chr17_KI270729v1_random 2667 0.95% 11
chr17_KI270730v1_random 115 0.10% 1
chr18 23087 0.03% 132
chr19 114853 0.20% 393
chr20 21240 0.03% 94
chr21 14299 0.03% 78
chr22 6350 0.01% 39
chr22_KI270732v1_random 166 0.40% 1
chr22_KI270735v1_random 328 0.77% 2
chr22_KI270736v1_random 570 0.31% 3
chrUn_GL000216v2 1748 0.99% 6
chrUn_KI270438v1 925 0.82% 4
chrUn_KI270442v1 2612 0.67% 11
chrUn_KI270467v1 1003 25.59% 2
chrUn_KI270519v1 505 0.37% 2
chrUn_KI270521v1 173 2.26% 1
chrUn_KI270538v1 287 0.31% 1
chrUn_KI270590v1 136 2.90% 1
chrUn_KI270750v1 604 0.41% 2
chrUn_KI270751v1 254 0.17% 2
chrUn_KI270754v1 133 0.33% 1
chrX 63139 0.04% 336
chrY 1189 <0.01% 5
3318 contigs with no values (125716446 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 5411 110 1573 195.3 169
global segment-length histogram

Files

Filename Size md5
ENCFF365UMA.bed.gz 90.71 KB 07d3328a3d68a51e5e5461197a511c47
ENCFF365UMA.tabix.bed.gz 50.75 KB 17b9e3c9b1d2f6ccab19c78bc88089b6
ENCFF365UMA.tabix.bed.gz.tbi 52.82 KB 3f9bbcb82c10a23e4113c6e4bf360862
genomic_resource.yaml 1.99 KB f54da881f1cc7248c356a32369ab26b3
statistics/