Resource

Id Histone_ChIP-seq/ENCSR658EVNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR658EVN [biosample_summary="Homo sapiens esophagus squamous epithelium tissue female adult (51 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR658EVN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0006920/
  • biosample_summary: Homo sapiens esophagus squamous epithelium tissue female adult (51 years)
  • date_created: 2019-08-14T04:39:35.110125+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR658EVN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR658EVN float

Histone_ChIP-seq_ENCSR658EVN
Histone_ChIP-seq ENCSR658EVN [biosample_summary="Homo sapiens esophagus squamous epithelium tissue female adult (51 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR658EVN [1.7, 9.24]
n
45,228,385
mean
3.82
sd
0.888

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 452283851.41% 53913
chr1 5115267 2.05% 5865
chr2 3144932 1.30% 3934
chr3 2494988 1.26% 3151
chr4 1265297 0.67% 1669
chr5 1852801 1.02% 2317
chr6 2027533 1.19% 2674
chr7 1809382 1.14% 2236
chr8 1605856 1.11% 2046
chr9 2236426 1.62% 2519
chr10 2249755 1.68% 2669
chr11 2681591 1.99% 3122
chr12 2198700 1.65% 2659
chr13 671231 0.59% 924
chr14 1655459 1.55% 1874
chr15 1630998 1.60% 1979
chr16 2144369 2.37% 2442
chr17 3275581 3.93% 3540
chr18 631600 0.79% 867
chr19 2746092 4.68% 2951
chr20 1506453 2.34% 1784
chr21 475510 1.02% 592
chr22 1571520 3.09% 1719
chrX 237044 0.15% 380
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53913 210 12498 838.91 678
global segment-length histogram

Files

Filename Size md5
ENCFF828YQS.bed.gz 1.09 MB d6495b7df7e3babfdcbe5fc17fa1c5e2
ENCFF828YQS.tabix.bed.gz 557.01 KB fa84628a7ddc3e6875704bacdf2ad2e9
ENCFF828YQS.tabix.bed.gz.tbi 205.4 KB c199bcc4ce2becd88fc18f1c1f9b71e2
genomic_resource.yaml 1.78 KB 87258e4cc5036a06aae03408143730cb
statistics/