Resource

Id Histone_ChIP-seq/ENCSR657OGAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR657OGA [biosample_summary="Homo sapiens SK-N-SH" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR657OGA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003072/
  • biosample_summary: Homo sapiens SK-N-SH
  • date_created: 2015-02-25T19:08:55.850228+00:00
  • date_released: 2017-01-12
  • doi: 10.17989/ENCSR657OGA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR657OGA float

Histone_ChIP-seq_ENCSR657OGA
Histone_ChIP-seq ENCSR657OGA [biosample_summary="Homo sapiens SK-N-SH" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR657OGA [1.21, 5.81]
n
19,968,963
mean
2.89
sd
0.532

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 199689630.62% 31849
chr1 1319651 0.53% 2126
chr2 1851625 0.76% 3033
chr2_KI270716v1_random 582 0.38% 1
chr3 1138654 0.57% 1827
chr4 1061476 0.56% 1776
chr4_GL000008v2_random 3246 1.55% 3
chr5 1133287 0.62% 1816
chr5_GL000208v1_random 864 0.93% 2
chr6 919971 0.54% 1503
chr7 2788998 1.75% 4316
chr8 853028 0.59% 1406
chr9 680033 0.49% 1044
chr10 897538 0.67% 1489
chr11 708727 0.52% 1154
chr12 917558 0.69% 1431
chr13 533854 0.47% 871
chr14 396642 0.37% 639
chr14_GL000009v2_random 360 0.18% 1
chr14_GL000225v1_random 1474 0.70% 3
chr14_KI270722v1_random 1539 0.79% 3
chr14_KI270725v1_random 2489 1.44% 4
chr15 533706 0.52% 857
chr16 351232 0.39% 579
chr17 600902 0.72% 913
chr17_GL000205v2_random 565 0.30% 1
chr17_KI270729v1_random 7198 2.56% 13
chr18 466508 0.58% 797
chr19 1442990 2.46% 1897
chr20 285998 0.44% 493
chr21 307368 0.66% 523
chr22 139916 0.28% 238
chr22_KI270732v1_random 2056 4.95% 3
chr22_KI270735v1_random 2700 6.31% 5
chr22_KI270736v1_random 5919 3.25% 11
chr22_KI270738v1_random 2692 2.71% 4
chrUn_GL000195v1 459 0.25% 1
chrUn_GL000216v2 7906 4.48% 12
chrUn_GL000219v1 362 0.20% 1
chrUn_GL000224v1 4407 2.45% 6
chrUn_KI270333v1 1910 70.77% 3
chrUn_KI270336v1 645 62.87% 2
chrUn_KI270337v1 464 41.39% 1
chrUn_KI270435v1 5920 6.37% 7
chrUn_KI270438v1 11626 10.33% 16
chrUn_KI270442v1 14019 3.58% 26
chrUn_KI270466v1 995 80.70% 1
chrUn_KI270467v1 1838 46.89% 2
chrUn_KI270468v1 1061 26.17% 2
chrUn_KI270509v1 637 27.48% 1
chrUn_KI270511v1 2052 25.25% 3
chrUn_KI270515v1 2876 45.21% 3
chrUn_KI270516v1 697 53.62% 1
chrUn_KI270517v1 1244 38.24% 2
chrUn_KI270519v1 3945 2.86% 7
chrUn_KI270522v1 425 7.49% 1
chrUn_KI270583v1 408 29.14% 1
chrUn_KI270584v1 496 10.99% 1
chrUn_KI270587v1 1266 42.64% 1
chrUn_KI270588v1 1954 31.73% 4
chrUn_KI270589v1 432 0.97% 1
chrUn_KI270590v1 1850 39.49% 4
chrUn_KI270591v1 501 8.64% 1
chrUn_KI270746v1 4022 6.05% 6
chrUn_KI270747v1 484 0.24% 1
chrUn_KI270749v1 718 0.45% 2
chrUn_KI270751v1 2355 1.56% 5
chrUn_KI270756v1 677 0.85% 2
chrUn_KI270757v1 4524 6.35% 6
chrX 521577 0.33% 927
chrY 2865 0.01% 7
3296 contigs with no values (124718352 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31849 200 8414 626.99 530
global segment-length histogram

Files

Filename Size md5
ENCFF218PAX.bed.gz 657.54 KB 52e7eb68a9a03892bf1bb39a8d4f895a
ENCFF218PAX.tabix.bed.gz 328.09 KB 1e459104ebcf6aca83c09daa777b8dc3
ENCFF218PAX.tabix.bed.gz.tbi 173.77 KB aff0d78bb4e4e4a2dd26e27b43466cd8
genomic_resource.yaml 3.21 KB 0784c407e5e5f435b56ca585d01613f3
statistics/