Resource

Id Histone_ChIP-seq/ENCSR657DYLcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR657DYL [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR657DYL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007950/
  • biosample_summary: Homo sapiens GM23338 originated from GM23248
  • date_created: 2015-08-27T17:08:33.584943+00:00
  • date_released: 2016-07-28
  • doi: 10.17989/ENCSR657DYL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Files ENCFF121NZR, ENCFF712UMI had incorrectly identified paired_end 1 and 2 metadata respectively. They have been corrected to match its fastq file flowcell signature accordingly.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR657DYL float

Histone_ChIP-seq_ENCSR657DYL
Histone_ChIP-seq ENCSR657DYL [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR657DYL [1.26, 61.6]
n
69,410,939
mean
21.2
sd
12.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 694109392.16% 45608
chr1 6699345 2.69% 4273
chr1_KI270709v1_random 492 0.74% 1
chr1_KI270712v1_random 1474 0.84% 2
chr1_KI270713v1_random 5106 12.53% 7
chr1_KI270714v1_random 1059 2.54% 3
chr2 4776232 1.97% 3136
chr3 3839980 1.94% 2451
chr4 2947369 1.55% 1983
chr4_GL000008v2_random 4237 2.02% 1
chr5 3481284 1.92% 2292
chr5_GL000208v1_random 1478 1.59% 3
chr6 4262824 2.50% 2604
chr7 3415195 2.14% 2348
chr8 2665085 1.84% 1765
chr9 2775015 2.01% 1831
chr9_KI270720v1_random 381 0.98% 1
chr10 2924575 2.19% 1901
chr11 3654138 2.71% 2363
chr12 3493553 2.62% 2248
chr13 1503698 1.31% 986
chr14 2230242 2.08% 1418
chr14_GL000194v1_random 242 0.13% 1
chr14_GL000225v1_random 12825 6.07% 24
chr14_KI270722v1_random 2352 1.21% 5
chr14_KI270724v1_random 425 1.07% 1
chr14_KI270725v1_random 781 0.45% 2
chr15 2257445 2.21% 1490
chr16 2506112 2.77% 1697
chr17 3755254 4.51% 2353
chr17_GL000205v2_random 28544 15.38% 25
chr17_KI270729v1_random 18156 6.46% 27
chr18 1250359 1.56% 845
chr19 4221016 7.20% 2791
chr20 1966071 3.05% 1297
chr21 727130 1.56% 541
chr22 1370618 2.70% 985
chr22_KI270733v1_random 8052 4.48% 16
chr22_KI270735v1_random 2487 5.81% 4
chr22_KI270736v1_random 8056 4.43% 7
chr22_KI270738v1_random 977 0.98% 2
chrUn_GL000195v1 2228 1.22% 4
chrUn_GL000214v1 423 0.31% 1
chrUn_GL000216v2 20387 11.54% 27
chrUn_GL000218v1 257 0.16% 1
chrUn_GL000219v1 8022 4.48% 5
chrUn_GL000220v1 1759 1.09% 5
chrUn_GL000224v1 3770 2.10% 7
chrUn_KI270429v1 647 47.54% 1
chrUn_KI270435v1 1848 1.99% 2
chrUn_KI270438v1 6732 5.98% 13
chrUn_KI270442v1 21442 5.47% 28
chrUn_KI270448v1 511 6.39% 1
chrUn_KI270466v1 473 38.36% 1
chrUn_KI270467v1 1311 33.44% 2
chrUn_KI270468v1 1703 42.00% 2
chrUn_KI270507v1 561 10.48% 1
chrUn_KI270509v1 456 19.67% 1
chrUn_KI270510v1 273 11.30% 1
chrUn_KI270511v1 1463 18.00% 3
chrUn_KI270515v1 1605 25.23% 2
chrUn_KI270516v1 701 53.92% 1
chrUn_KI270517v1 1485 45.65% 1
chrUn_KI270519v1 1505 1.09% 3
chrUn_KI270538v1 4086 4.47% 7
chrUn_KI270584v1 723 16.02% 1
chrUn_KI270588v1 400 6.50% 1
chrUn_KI270589v1 2147 4.83% 5
chrUn_KI270591v1 950 16.39% 2
chrUn_KI270593v1 402 13.22% 1
chrUn_KI270744v1 3684 2.19% 3
chrUn_KI270746v1 788 1.19% 2
chrUn_KI270747v1 493 0.25% 1
chrUn_KI270749v1 693 0.44% 1
chrUn_KI270750v1 439 0.29% 1
chrUn_KI270751v1 1271 0.84% 2
chrUn_KI270754v1 365 0.91% 1
chrUn_KI270756v1 574 0.72% 1
chrUn_KI270757v1 4161 5.84% 6
chrX 2363780 1.51% 1626
chrY 126757 0.22% 104
3286 contigs with no values (123430115 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 45608 220 17039 1521.9 1071
global segment-length histogram

Files

Filename Size md5
ENCFF327BFN.bed.gz 1.2 MB 6e48cb8c3729ab2b64384dd4f2ab4c31
ENCFF327BFN.tabix.bed.gz 518.56 KB 7e81ff68669b2206f33eef5a021173bf
ENCFF327BFN.tabix.bed.gz.tbi 225.38 KB 23a6004f8755e918399dc73e91dd2ff3
genomic_resource.yaml 1.62 KB ac4b951e6858d447ecba39f6a8f2eff5
statistics/