Histone_ChIP-seq_ENCSR655QXR
Histone_ChIP-seq ENCSR655QXR [biosample_summary="Homo sapiens heart left ventricle tissue male adult (61 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR655QXR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR655QXR [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (61 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN115QES|/analyses/ENCAN115QES/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF597WLD|/files/ENCFF597WLD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF597WLD|/files/ENCFF597WLD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.81. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR655QXR | float |
Histone_ChIP-seq_ENCSR655QXR |
Histone_ChIP-seq ENCSR655QXR [biosample_summary="Homo sapiens heart left ventricle tissue male adult (61 years)" and target="H3K27me3"]
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[1.78, 8.28] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF366MFG.bed.gz | 264.9 KB | c840c06c69876c6ac749a6a5917b8602 |
| ENCFF366MFG.bed.gz.dvc | 100.0 B | faeed7ce5ad2452327d1e69b60f82f1e |
| ENCFF366MFG.tabix.bed.gz | 142.7 KB | 842e9d8c07fb8c670bd70bbf73d1a856 |
| ENCFF366MFG.tabix.bed.gz.dvc | 106.0 B | c650a4d2316423caa2a6515d87a54334 |
| ENCFF366MFG.tabix.bed.gz.tbi | 67.34 KB | ba5daee7b62305ad83430e3a98ff1ac9 |
| ENCFF366MFG.tabix.bed.gz.tbi.dvc | 109.0 B | d7bfcad467781f4fef07d65cdfbb1105 |
| genomic_resource.yaml | 2.79 KB | a19d1e930212dfd77ff6c7c38c9dc403 |
| genomic_resource_original.yaml | 2.65 KB | cddf590e855cfe241b5eb1067cd81e25 |
| statistics/ |