Resource
| Id | Histone_ChIP-seq/ENCSR653OJO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR653OJO [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (88 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (88 years) with mild cognitive impairment output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN508FPY|/analyses/ENCAN508FPY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF545ULI|/files/ENCFF545ULI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 40966045 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR653OJO | float |
Histone_ChIP-seq_ENCSR653OJO |
Histone_ChIP-seq ENCSR653OJO [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (88 years)" and target="H3K27me3"]
|
 |
[1.52, 10.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 38634364 | 1.20% | 46589 |
| chr1 | 1352945 | 0.54% | 1487 |
| chr2 | 1392508 | 0.57% | 1414 |
| chr3 | 527129 | 0.27% | 592 |
| chr4 | 852191 | 0.45% | 825 |
| chr5 | 971126 | 0.53% | 923 |
| chr6 | 1434147 | 0.84% | 1277 |
| chr7 | 969980 | 0.61% | 843 |
| chr8 | 746705 | 0.51% | 779 |
| chr9 | 576706 | 0.42% | 583 |
| chr10 | 1148764 | 0.86% | 1178 |
| chr11 | 679781 | 0.50% | 751 |
| chr12 | 885871 | 0.66% | 850 |
| chr13 | 424743 | 0.37% | 441 |
| chr14 | 877296 | 0.82% | 977 |
| chr15 | 680146 | 0.67% | 774 |
| chr16 | 707182 | 0.78% | 833 |
| chr17 | 1045938 | 1.26% | 957 |
| chr18 | 401489 | 0.50% | 459 |
| chr19 | 804397 | 1.37% | 923 |
| chr20 | 628676 | 0.98% | 760 |
| chr21 | 355432 | 0.76% | 420 |
| chr22 | 279934 | 0.55% | 359 |
| chrX | 20890939 | 13.39% | 28183 |
| chrY | 339 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 46589 | 210 | 32266 | 829.26 | 612 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF228RUP.bed.gz | 853.23 KB | e05d1c22c9ce8ba2165e931609efc6d3 |
| ENCFF228RUP.tabix.bed.gz | 447.6 KB | 68829997002f11f918845d1a4cd2bb39 |
| ENCFF228RUP.tabix.bed.gz.tbi | 116.5 KB | adcd32eefbdc111057ba0cadb07eb414 |
| genomic_resource.yaml | 2.21 KB | 20c7b911f4524700974561e4796aaf7e |
| statistics/ |