Resource

Id Histone_ChIP-seq/ENCSR653NOJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR653NOJ [biosample_summary="Homo sapiens BLaER1" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR653NOJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1
  • date_created: 2022-01-27T21:50:26.866383+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR653NOJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR653NOJ float

Histone_ChIP-seq_ENCSR653NOJ
Histone_ChIP-seq ENCSR653NOJ [biosample_summary="Homo sapiens BLaER1" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR653NOJ [1.22, 89.6]
n
58,956,184
mean
32.9
sd
26.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 589561841.83% 53572
chr1 5490326 2.21% 4838
chr1_KI270706v1_random 597 0.34% 2
chr1_KI270709v1_random 1595 2.39% 1
chr1_KI270712v1_random 3294 1.87% 5
chr1_KI270713v1_random 3359 8.24% 5
chr2 3888258 1.61% 3686
chr3 2899102 1.46% 2517
chr3_GL000221v1_random 834 0.54% 1
chr4 2069936 1.09% 1855
chr4_GL000008v2_random 1228 0.59% 1
chr5 2756436 1.52% 2465
chr6 2967223 1.74% 2454
chr7 2914140 1.83% 2693
chr8 2332322 1.61% 2215
chr9 2562411 1.85% 2365
chr9_KI270717v1_random 420 1.05% 1
chr9_KI270719v1_random 797 0.45% 2
chr10 2606805 1.95% 2538
chr11 2992999 2.22% 2589
chr12 2893495 2.17% 2460
chr13 1113712 0.97% 1012
chr14 1998387 1.87% 1763
chr14_GL000009v2_random 908 0.45% 2
chr14_GL000194v1_random 2117 1.11% 4
chr14_GL000225v1_random 1031 0.49% 3
chr14_KI270724v1_random 757 1.91% 2
chr14_KI270725v1_random 1602 0.93% 4
chr15 1780466 1.75% 1646
chr15_KI270727v1_random 1008 0.22% 2
chr16 2658327 2.94% 2521
chr16_KI270728v1_random 3213 0.17% 7
chr17 3772857 4.53% 3239
chr17_GL000205v2_random 10466 5.64% 6
chr17_KI270729v1_random 8732 3.11% 13
chr17_KI270730v1_random 1378 1.22% 4
chr18 953748 1.19% 896
chr19 4452643 7.60% 4249
chr20 1705528 2.65% 1618
chr21 828464 1.77% 867
chr22 1714633 3.37% 1663
chr22_KI270731v1_random 263 0.17% 1
chr22_KI270732v1_random 701 1.69% 2
chr22_KI270733v1_random 6432 3.58% 13
chr22_KI270734v1_random 262 0.16% 1
chr22_KI270735v1_random 1032 2.41% 3
chr22_KI270736v1_random 1840 1.01% 5
chr22_KI270737v1_random 522 0.50% 2
chrUn_GL000195v1 4544 2.48% 5
chrUn_GL000214v1 395 0.29% 1
chrUn_GL000216v2 6824 3.86% 17
chrUn_GL000219v1 4494 2.51% 4
chrUn_GL000220v1 1447 0.89% 4
chrUn_GL000224v1 679 0.38% 2
chrUn_KI270435v1 262 0.28% 1
chrUn_KI270438v1 5397 4.80% 8
chrUn_KI270442v1 6248 1.59% 19
chrUn_KI270744v1 621 0.37% 2
chrUn_KI270749v1 942 0.59% 1
chrUn_KI270754v1 307 0.76% 1
chrUn_KI270756v1 708 0.89% 2
chrX 1509150 0.97% 1243
chrY 7560 0.01% 21
3304 contigs with no values (121391501 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53572 250 22668 1100.5 567
global segment-length histogram

Files

Filename Size md5
ENCFF796QTV.bed.gz 1.2 MB a3c0ceb16f4989dc0e8bd7c711cfd76d
ENCFF796QTV.tabix.bed.gz 567.23 KB e3cbc883c642dbc9803edd266030cbb7
ENCFF796QTV.tabix.bed.gz.tbi 212.1 KB 2605f4a8596cc08cbf5805f21449b0ca
genomic_resource.yaml 2.56 KB ff4ed2864893e7beba9a0aaf8fba9263
statistics/