Resource

Id Histone_ChIP-seq/ENCSR652QNWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR652QNW [biosample_summary="Homo sapiens cardiac muscle cell originated from RUES2" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR652QNW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000746/
  • biosample_summary: Homo sapiens cardiac muscle cell originated from RUES2
  • date_created: 2016-10-18T22:33:22.477609+00:00
  • date_released: 2016-11-03
  • doi: 10.17989/ENCSR652QNW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: embryo
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR652QNW float

Histone_ChIP-seq_ENCSR652QNW
Histone_ChIP-seq ENCSR652QNW [biosample_summary="Homo sapiens cardiac muscle cell originated from RUES2" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR652QNW [1.35, 37.9]
n
36,878,171
mean
15.4
sd
6.54

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 368781711.15% 22445
chr1 3602476 1.45% 2215
chr1_KI270712v1_random 1175 0.67% 3
chr1_KI270713v1_random 680 1.67% 2
chr1_KI270714v1_random 544 1.30% 1
chr2 2540618 1.05% 1517
chr3 2122043 1.07% 1207
chr4 1587804 0.83% 841
chr5 1876133 1.03% 1047
chr6 2247617 1.32% 1258
chr7 1776336 1.11% 1097
chr8 1428881 0.98% 818
chr9 1438278 1.04% 916
chr10 1645294 1.23% 957
chr11 1925957 1.43% 1200
chr12 1917942 1.44% 1123
chr13 776797 0.68% 432
chr14 1204641 1.13% 730
chr15 1232020 1.21% 759
chr16 1343785 1.49% 884
chr17 2044876 2.46% 1296
chr17_GL000205v2_random 885 0.48% 2
chr18 685688 0.85% 382
chr19 2230974 3.81% 1633
chr20 945153 1.47% 599
chr21 322389 0.69% 212
chr22 721529 1.42% 505
chr22_KI270733v1_random 366 0.20% 1
chrUn_GL000195v1 1631 0.89% 2
chrUn_GL000219v1 515 0.29% 1
chrUn_GL000220v1 546 0.34% 2
chrUn_GL000224v1 343 0.19% 1
chrX 1254255 0.80% 802
3334 contigs with no values (184977043 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 22445 210 23454 1643.05 1418
global segment-length histogram

Files

Filename Size md5
ENCFF905NTT.bed.gz 653.83 KB cfc37ba4bb777f3a556c2f1a12206d35
ENCFF905NTT.tabix.bed.gz 267.53 KB 5769e9301e17641484dce0425337ec07
ENCFF905NTT.tabix.bed.gz.tbi 143.32 KB 058ad82e5a95d39064f929dda498a626
genomic_resource.yaml 2.13 KB 6845e9e9352721ed84dff523b0442963
statistics/