Resource
| Id | Histone_ChIP-seq/ENCSR651JDA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR651JDA [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN619UVA|/analyses/ENCAN619UVA/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF343TOI|/files/ENCFF343TOI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 39724091 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR651JDA | float |
Histone_ChIP-seq_ENCSR651JDA |
Histone_ChIP-seq ENCSR651JDA [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K36me3"]
|
 |
[1.29, 7.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 26473805 | 0.82% | 61438 |
| chr1 | 2519237 | 1.01% | 6037 |
| chr1_KI270711v1_random | 123 | 0.29% | 1 |
| chr2 | 2343924 | 0.97% | 5597 |
| chr3 | 1708650 | 0.86% | 4143 |
| chr4 | 1396193 | 0.73% | 3332 |
| chr5 | 1690462 | 0.93% | 3979 |
| chr5_GL000208v1_random | 258 | 0.28% | 1 |
| chr6 | 1310133 | 0.77% | 3235 |
| chr7 | 1155959 | 0.73% | 2743 |
| chr8 | 994057 | 0.68% | 2445 |
| chr9 | 1054743 | 0.76% | 2469 |
| chr10 | 1146044 | 0.86% | 2757 |
| chr11 | 1157593 | 0.86% | 2782 |
| chr12 | 1485358 | 1.11% | 3389 |
| chr13 | 714442 | 0.62% | 1726 |
| chr14 | 977196 | 0.91% | 2337 |
| chr14_KI270724v1_random | 310 | 0.78% | 1 |
| chr15 | 1023546 | 1.00% | 2433 |
| chr16 | 783461 | 0.87% | 1736 |
| chr17 | 1028105 | 1.23% | 2441 |
| chr17_GL000205v2_random | 161 | 0.09% | 1 |
| chr17_KI270729v1_random | 852 | 0.30% | 4 |
| chr18 | 477015 | 0.59% | 1172 |
| chr19 | 2045960 | 3.49% | 2985 |
| chr20 | 481868 | 0.75% | 1210 |
| chr21 | 296348 | 0.63% | 689 |
| chr22 | 338550 | 0.67% | 815 |
| chr22_KI270735v1_random | 731 | 1.71% | 3 |
| chrUn_GL000216v2 | 1009 | 0.57% | 2 |
| chrUn_GL000218v1 | 241 | 0.15% | 1 |
| chrUn_GL000224v1 | 224 | 0.12% | 1 |
| chrUn_KI270435v1 | 329 | 0.35% | 2 |
| chrUn_KI270438v1 | 235 | 0.21% | 1 |
| chrUn_KI270442v1 | 4202 | 1.07% | 16 |
| chrUn_KI270468v1 | 213 | 5.25% | 1 |
| chrUn_KI270515v1 | 154 | 2.42% | 1 |
| chrUn_KI270519v1 | 123 | 0.09% | 1 |
| chrUn_KI270538v1 | 494 | 0.54% | 2 |
| chrUn_KI270587v1 | 341 | 11.49% | 1 |
| chrUn_KI270589v1 | 238 | 0.54% | 1 |
| chrUn_KI270591v1 | 1056 | 18.22% | 3 |
| chrUn_KI270751v1 | 443 | 0.29% | 3 |
| chrUn_KI270757v1 | 1472 | 2.07% | 6 |
| chrX | 331457 | 0.21% | 932 |
| chrY | 295 | <0.01% | 1 |
| 3321 contigs with no values (126763310 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 61438 | 105 | 7840 | 430.9 | 345 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF823OKF.bed.gz | 1.16 MB | 04598cec389e6d9806999e308c449915 |
| ENCFF823OKF.tabix.bed.gz | 600.0 KB | 63565fd36cc17026dfc9461c1c9b782d |
| ENCFF823OKF.tabix.bed.gz.tbi | 167.81 KB | 2f26bc553d8fa4eb7506785ae198dcec |
| genomic_resource.yaml | 1.99 KB | 641dfeeb6f58482c5e701d5e6be9865c |
| statistics/ |