Resource
| Id | Histone_ChIP-seq/ENCSR645QZT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR645QZT [biosample_summary="Homo sapiens thymus tissue female embryo (110 days)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (110 days) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN200WYM|/analyses/ENCAN200WYM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF168KCK|/files/ENCFF168KCK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 24482471 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR645QZT | float |
Histone_ChIP-seq_ENCSR645QZT |
Histone_ChIP-seq ENCSR645QZT [biosample_summary="Homo sapiens thymus tissue female embryo (110 days)" and target="H3K36me3"]
|
 |
[1.83, 25.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 108919976 | 3.39% | 152538 |
| chr1 | 10935259 | 4.39% | 14836 |
| chr2 | 9222746 | 3.81% | 13160 |
| chr3 | 7516156 | 3.79% | 10530 |
| chr4 | 4233898 | 2.23% | 6357 |
| chr5 | 5772988 | 3.18% | 8305 |
| chr6 | 5484702 | 3.21% | 7961 |
| chr7 | 4955946 | 3.11% | 7120 |
| chr8 | 3379165 | 2.33% | 5260 |
| chr9 | 4489153 | 3.24% | 6086 |
| chr10 | 4553643 | 3.40% | 6713 |
| chr11 | 5364840 | 3.97% | 7034 |
| chr12 | 6578220 | 4.94% | 8737 |
| chr13 | 2329200 | 2.04% | 3673 |
| chr14 | 3402479 | 3.18% | 4994 |
| chr15 | 3630908 | 3.56% | 5468 |
| chr16 | 4456841 | 4.93% | 5886 |
| chr17 | 6800714 | 8.17% | 8656 |
| chr18 | 1683340 | 2.09% | 2669 |
| chr19 | 5029794 | 8.58% | 6528 |
| chr20 | 2953118 | 4.58% | 4102 |
| chr21 | 1477645 | 3.16% | 2035 |
| chr22 | 2922848 | 5.75% | 3480 |
| chrUn_GL000195v1 | 288 | 0.16% | 1 |
| chrX | 1746085 | 1.12% | 2947 |
| 3342 contigs with no values (186121604 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 152538 | 155 | 22439 | 714.05 | 497 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF079HUN.bed.gz | 2.99 MB | 090dc44bafdd62f903318a638b429ba4 |
| ENCFF079HUN.tabix.bed.gz | 1.44 MB | cc10ee2a6245dcba6c47ac04b63322fc |
| ENCFF079HUN.tabix.bed.gz.tbi | 159.2 KB | 154911fbcb32e407628547ab0409262c |
| genomic_resource.yaml | 1.99 KB | be9546374734e00bd1f23ed33e537107 |
| statistics/ |