Histone_ChIP-seq_ENCSR645FBM
Histone_ChIP-seq ENCSR645FBM [biosample_summary="Homo sapiens ascending aorta tissue female adult (51 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR645FBM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR645FBM [biosamplesummary="Homo sapiens ascending aorta tissue female adult (51 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN216NAX|/analyses/ENCAN216NAX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN216NAX|/analyses/ENCAN216NAX/} has in progress subobject document {a825291f-1dd9-4f7d-9fe3-2224ca3c9834|/documents/a825291f-1dd9-4f7d-9fe3-2224ca3c9834/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF762HPH|/files/ENCFF762HPH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF762HPH|/files/ENCFF762HPH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.19. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR645FBM | float |
Histone_ChIP-seq_ENCSR645FBM |
Histone_ChIP-seq ENCSR645FBM [biosample_summary="Homo sapiens ascending aorta tissue female adult (51 years)" and target="H3K4me3"]
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[1.61, 59.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF391SLS.bed.gz | 1.06 MB | 0eb410e9c4ffc056a41c9f51675066c7 |
| ENCFF391SLS.bed.gz.dvc | 101.0 B | 7483ef82298f43353abdc41fbab1b456 |
| ENCFF391SLS.tabix.bed.gz | 461.17 KB | 94d4576c59eceffc9cff1c1c7b21e57d |
| ENCFF391SLS.tabix.bed.gz.dvc | 106.0 B | 59e8e8adb655c138c9b13ca455c798fd |
| ENCFF391SLS.tabix.bed.gz.tbi | 212.51 KB | 7418ae7627b428c0a36e113be907c58a |
| ENCFF391SLS.tabix.bed.gz.tbi.dvc | 110.0 B | 357311dfe2db881e1358b6e266a85019 |
| genomic_resource.yaml | 3.0 KB | c2dab004334370bf84e9b619b72553e8 |
| genomic_resource_original.yaml | 2.86 KB | 7c1fab924b2e649d370d2dea55d2d03c |
| statistics/ |