Resource

Id Histone_ChIP-seq/ENCSR643ULBcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR643ULB [biosample_summary="Homo sapiens kidney tissue male adult (67 years)" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR643ULB
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002113/
  • biosample_summary: Homo sapiens kidney tissue male adult (67 years)
  • date_created: 2015-09-15T19:52:20.862050+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR643ULB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (67 years)
  • status: released
  • submitter_comment:
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR643ULB float

Histone_ChIP-seq_ENCSR643ULB
Histone_ChIP-seq ENCSR643ULB [biosample_summary="Homo sapiens kidney tissue male adult (67 years)" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR643ULB [1.89, 36.2]
n
16,474,118
mean
5.74
sd
2.21

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 164741180.51% 31226
chr1 1783353 0.72% 3342
chr2 1191124 0.49% 2200
chr3 975986 0.49% 1788
chr4 658694 0.35% 1204
chr5 795731 0.44% 1437
chr6 945243 0.55% 1697
chr7 736684 0.46% 1394
chr8 558083 0.38% 1088
chr9 687789 0.50% 1351
chr10 716078 0.54% 1366
chr11 936763 0.69% 1748
chr12 936602 0.70% 1734
chr13 331361 0.29% 598
chr14 574784 0.54% 1054
chr15 540454 0.53% 1022
chr16 621146 0.69% 1240
chr17 1005685 1.21% 1975
chr17_GL000205v2_random 647 0.35% 1
chr18 250954 0.31% 487
chr19 970130 1.66% 1918
chr20 420776 0.65% 828
chr21 149013 0.32% 302
chr22 394027 0.78% 783
chrUn_GL000219v1 400 0.22% 1
chrX 278769 0.18% 646
chrY 13842 0.02% 22
3340 contigs with no values (128712296 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31226 170 9012 527.58 409
global segment-length histogram

Files

Filename Size md5
ENCFF935JDZ.bed.gz 636.29 KB 783b683d24dff240203047b41d62c64b
ENCFF935JDZ.tabix.bed.gz 318.0 KB 5735ab755e530d8c404306bb2d751655
ENCFF935JDZ.tabix.bed.gz.tbi 129.33 KB b5312d923221ef1d3b984ce3e1f7f69d
genomic_resource.yaml 1.48 KB 3b538987eb853efebc66395f4f2e46ab
statistics/