Resource

Id Histone_ChIP-seq/ENCSR643TBIcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR643TBI [biosample_summary="Homo sapiens chorionic villus tissue female embryo (40 weeks)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR643TBI
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007106/
  • biosample_summary: Homo sapiens chorionic villus tissue female embryo (40 weeks)
  • date_created: 2017-03-22T16:16:45.623845+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR643TBI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (40 weeks)
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR643TBI float

Histone_ChIP-seq_ENCSR643TBI
Histone_ChIP-seq ENCSR643TBI [biosample_summary="Homo sapiens chorionic villus tissue female embryo (40 weeks)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR643TBI [1.39, 31.3]
n
102,349,798
mean
8.27
sd
4.32

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1023497983.18% 89810
chr1 11058069 4.44% 9415
chr2 7533880 3.11% 6810
chr3 6493424 3.27% 5806
chr4 3598230 1.89% 3501
chr5 5115819 2.82% 4616
chr6 5899460 3.45% 5417
chr7 5287467 3.32% 4850
chr8 4165496 2.87% 3765
chr9 4692041 3.39% 4019
chr10 4433405 3.31% 3995
chr11 5818632 4.31% 4745
chr12 4952482 3.72% 4419
chr13 1958190 1.71% 2020
chr14 3965719 3.70% 3178
chr15 3331990 3.27% 2913
chr16 3716863 4.11% 3060
chr17 4965948 5.96% 4017
chr18 1543731 1.92% 1556
chr19 5092720 8.69% 4077
chr20 3053436 4.74% 2452
chr21 1180777 2.53% 1072
chr22 2652895 5.22% 1945
chrX 1839124 1.18% 2162
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 89810 175 30192 1139.63 702
global segment-length histogram

Files

Filename Size md5
ENCFF477SWG.bed.gz 1.94 MB cb2b7e3a2e43962e2a009a64d1215ed9
ENCFF477SWG.tabix.bed.gz 932.1 KB 91380b2a3a243dc008721a203a714637
ENCFF477SWG.tabix.bed.gz.tbi 211.37 KB 915b3a7099df910969d5a8ae10a6d0da
genomic_resource.yaml 1.53 KB 591b17a0a37e0e860f84a6acfb29de87
statistics/