Histone_ChIP-seq_ENCSR643QXU
Histone_ChIP-seq ENCSR643QXU [biosample_summary="Homo sapiens SJSA1" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR643QXU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR643QXU [biosamplesummary="Homo sapiens SJSA1" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN630CCB|/analyses/ENCAN630CCB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF493XJW|/files/ENCFF493XJW/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF493XJW|/files/ENCFF493XJW/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.14. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF397TKX|/files/ENCFF397TKX/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF397TKX|/files/ENCFF397TKX/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.69. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR643QXU | float |
Histone_ChIP-seq_ENCSR643QXU |
Histone_ChIP-seq ENCSR643QXU [biosample_summary="Homo sapiens SJSA1" and target="H3K36me3"]
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[1.12, 23.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF059FXY.bed.gz | 3.21 MB | 42bfb05a643d5e6934dd4098bd95877d |
| ENCFF059FXY.bed.gz.dvc | 101.0 B | 4fc750c6cd52e00c0019e731bc87d13e |
| ENCFF059FXY.tabix.bed.gz | 1.41 MB | 54c29abf468852635f94da6d1cba0ab9 |
| ENCFF059FXY.tabix.bed.gz.dvc | 107.0 B | b1fcd11fa4a3db967c52af70a2415d66 |
| ENCFF059FXY.tabix.bed.gz.tbi | 167.67 KB | 0a01731237fa654ab2147d8396b9aacd |
| ENCFF059FXY.tabix.bed.gz.tbi.dvc | 110.0 B | 3157170f1a538c5fddf0dd60facc73b6 |
| genomic_resource.yaml | 4.0 KB | 52151621b732f4529b208a2fe9df806e |
| genomic_resource_original.yaml | 3.89 KB | cb58cbf0858a73fc78b1656bdf646328 |
| statistics/ |