Resource

Id Histone_ChIP-seq/ENCSR643KIDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR643KID [biosample_summary="Homo sapiens transverse colon tissue male adult (37 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR643KID
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001157/
  • biosample_summary: Homo sapiens transverse colon tissue male adult (37 years)
  • date_created: 2017-07-28T10:04:32.786566+00:00
  • date_released: 2017-08-28
  • doi: 10.17989/ENCSR643KID
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR643KID float

Histone_ChIP-seq_ENCSR643KID
Histone_ChIP-seq ENCSR643KID [biosample_summary="Homo sapiens transverse colon tissue male adult (37 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR643KID [1.43, 15.1]
n
6,840,486
mean
2.95
sd
0.797

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 68404860.21% 3222
chr1 549082 0.22% 278
chr1_KI270712v1_random 2223 1.26% 1
chr1_KI270713v1_random 709 1.74% 1
chr2 614710 0.25% 237
chr3 292049 0.15% 143
chr4 298256 0.16% 136
chr5 387756 0.21% 173
chr6 572426 0.34% 259
chr7 389864 0.24% 173
chr8 304432 0.21% 135
chr9 311209 0.22% 145
chr10 359668 0.27% 156
chr11 304835 0.23% 163
chr12 349741 0.26% 163
chr13 197614 0.17% 80
chr14 222428 0.21% 96
chr15 189709 0.19% 96
chr16 183702 0.20% 90
chr17 383442 0.46% 184
chr17_GL000205v2_random 8382 4.52% 3
chr18 106902 0.13% 61
chr19 398299 0.68% 209
chr20 201032 0.31% 112
chr21 71187 0.15% 35
chr22 96916 0.19% 63
chr22_KI270732v1_random 1344 3.24% 1
chr22_KI270733v1_random 7608 4.23% 4
chrUn_GL000195v1 2263 1.24% 1
chrUn_GL000224v1 687 0.38% 1
chrX 32011 0.02% 23
3336 contigs with no values (185318217 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 3222 521 25469 2123.06 1589
global segment-length histogram

Files

Filename Size md5
ENCFF521JKS.bed.gz 80.48 KB 993e87c158ba8def33271fd37ca9b071
ENCFF521JKS.tabix.bed.gz 37.71 KB 13f9f7d20b74cd90a6aa6840f6ffc203
ENCFF521JKS.tabix.bed.gz.tbi 26.24 KB ab2a058727a9edd90a705f17027212a6
genomic_resource.yaml 1.51 KB e2ac7aec3e4b6c728ac506123ec9dc49
statistics/