Resource

Id Histone_ChIP-seq/ENCSR642CSXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR642CSX [biosample_summary="Homo sapiens prostate gland tissue male adult (54 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR642CSX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002367/
  • biosample_summary: Homo sapiens prostate gland tissue male adult (54 years)
  • date_created: 2017-12-06T21:15:53.764061+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR642CSX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR642CSX float

Histone_ChIP-seq_ENCSR642CSX
Histone_ChIP-seq ENCSR642CSX [biosample_summary="Homo sapiens prostate gland tissue male adult (54 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR642CSX [1.21, 6.83]
n
11,478,627
mean
3.27
sd
0.661

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 114786270.36% 34408
chr1 1292943 0.52% 3726
chr1_KI270712v1_random 152 0.09% 1
chr2 791832 0.33% 2497
chr3 667877 0.34% 2082
chr4 349410 0.18% 1164
chr5 483936 0.27% 1563
chr6 516909 0.30% 1696
chr7 473087 0.30% 1511
chr8 430796 0.30% 1368
chr9 608108 0.44% 1724
chr10 580393 0.43% 1744
chr11 658192 0.49% 1908
chr12 544985 0.41% 1667
chr13 201719 0.18% 670
chr14 423605 0.40% 1207
chr15 449950 0.44% 1346
chr16 517565 0.57% 1461
chr17 800184 0.96% 2202
chr18 163538 0.20% 565
chr19 586517 1.00% 1596
chr20 377178 0.59% 1135
chr21 145343 0.31% 447
chr22 400626 0.79% 1073
chr22_KI270733v1_random 275 0.15% 1
chrUn_KI270466v1 152 12.33% 1
chrX 13355 0.01% 53
3340 contigs with no values (185947452 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34408 100 4769 333.6 279
global segment-length histogram

Files

Filename Size md5
ENCFF494GSR.bed.gz 656.63 KB 0eef91aa946972aec48840650889910f
ENCFF494GSR.tabix.bed.gz 337.48 KB 3e897fd87f5cb59ea5cf0af6999351b2
ENCFF494GSR.tabix.bed.gz.tbi 165.72 KB dc6f637f9c07ff626f5901dc97fb6695
genomic_resource.yaml 1.98 KB c4c4d54453419597e74d9f77cbf77762
statistics/