Resource
| Id | Histone_ChIP-seq/ENCSR641RQV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR641RQV [biosample_summary="Homo sapiens esophagus tissue female adult (30 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (30 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN905GJB|/analyses/ENCAN905GJB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN905GJB|/analyses/ENCAN905GJB/} has in progress subobject document {71282d06-c00a-4c3d-a66b-b3a7a47d4a56|/documents/71282d06-c00a-4c3d-a66b-b3a7a47d4a56/} audit_not_compliant: Processed alignments file {ENCFF976CDV|/files/ENCFF976CDV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 20327168 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR641RQV | float |
Histone_ChIP-seq_ENCSR641RQV |
Histone_ChIP-seq ENCSR641RQV [biosample_summary="Homo sapiens esophagus tissue female adult (30 years)" and target="H3K27me3"]
|
 |
[2.14, 8.42] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 3680776 | 0.11% | 10209 |
| chr1 | 251983 | 0.10% | 703 |
| chr2 | 219628 | 0.09% | 616 |
| chr3 | 165794 | 0.08% | 464 |
| chr4 | 129517 | 0.07% | 345 |
| chr5 | 155184 | 0.09% | 444 |
| chr6 | 145276 | 0.09% | 420 |
| chr7 | 135580 | 0.09% | 366 |
| chr8 | 124294 | 0.09% | 358 |
| chr9 | 123846 | 0.09% | 330 |
| chr10 | 154427 | 0.12% | 381 |
| chr11 | 154078 | 0.11% | 412 |
| chr12 | 137614 | 0.10% | 382 |
| chr13 | 88680 | 0.08% | 236 |
| chr14 | 90781 | 0.08% | 249 |
| chr15 | 97976 | 0.10% | 264 |
| chr16 | 70805 | 0.08% | 196 |
| chr17 | 113878 | 0.14% | 306 |
| chr18 | 64943 | 0.08% | 175 |
| chr19 | 36855 | 0.06% | 104 |
| chr20 | 100826 | 0.16% | 254 |
| chr21 | 23880 | 0.05% | 70 |
| chr22 | 49261 | 0.10% | 126 |
| chrX | 1045670 | 0.67% | 3008 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 10209 | 185 | 1755 | 360.54 | 317 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF146BLW.bed.gz | 191.26 KB | db8707f042ff62da069f01f29ae973c6 |
| ENCFF146BLW.tabix.bed.gz | 100.77 KB | acb27fe8c255e2f5158aebb69aa227d3 |
| ENCFF146BLW.tabix.bed.gz.tbi | 72.61 KB | a96b94ceadf8776d51d6c11e6aaa676d |
| genomic_resource.yaml | 2.21 KB | 120051a681313bf3dd70c3bd2d9810cb |
| statistics/ |