Resource

Id Histone_ChIP-seq/ENCSR639RKZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR639RKZ [biosample_summary="Homo sapiens stomach tissue male adult (34 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR639RKZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue male adult (34 years)
  • date_created: 2015-10-01T07:17:29.214164+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR639RKZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (34 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR639RKZ float

Histone_ChIP-seq_ENCSR639RKZ
Histone_ChIP-seq ENCSR639RKZ [biosample_summary="Homo sapiens stomach tissue male adult (34 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR639RKZ [1.78, 17.5]
n
10,441,505
mean
4.86
sd
1.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 104415050.32% 35844
chr1 570775 0.23% 2064
chr1_KI270708v1_random 209 0.16% 1
chr1_KI270709v1_random 1095 1.64% 3
chr1_KI270712v1_random 646 0.37% 2
chr2 644280 0.27% 2371
chr3 489451 0.25% 1820
chr4 652047 0.34% 2375
chr4_GL000008v2_random 4368 2.08% 1
chr5 768642 0.42% 2626
chr5_GL000208v1_random 196 0.21% 1
chr6 426613 0.25% 1601
chr7 659595 0.41% 2264
chr8 538671 0.37% 1937
chr9 325013 0.23% 1159
chr9_KI270718v1_random 556 1.46% 1
chr9_KI270719v1_random 446 0.25% 2
chr9_KI270720v1_random 281 0.72% 1
chr10 453442 0.34% 1665
chr11 366670 0.27% 1346
chr12 546794 0.41% 1740
chr13 311181 0.27% 1189
chr14 275244 0.26% 991
chr14_GL000009v2_random 138 0.07% 1
chr14_GL000194v1_random 410 0.21% 2
chr14_GL000225v1_random 20171 9.55% 52
chr14_KI270722v1_random 3915 2.02% 11
chr14_KI270723v1_random 239 0.63% 1
chr14_KI270724v1_random 1437 3.63% 4
chr15 307654 0.30% 931
chr16 333064 0.37% 1137
chr16_KI270728v1_random 961 0.05% 4
chr17 170595 0.20% 626
chr17_GL000205v2_random 7869 4.24% 21
chr17_KI270729v1_random 11383 4.05% 30
chr17_KI270730v1_random 7305 6.49% 18
chr18 249700 0.31% 930
chr19 1271986 2.17% 3485
chr20 230583 0.36% 780
chr21 184093 0.39% 580
chr22 130550 0.26% 459
chr22_KI270732v1_random 1093 2.63% 3
chr22_KI270733v1_random 707 0.39% 3
chr22_KI270735v1_random 2203 5.15% 5
chr22_KI270736v1_random 38545 21.19% 101
chr22_KI270738v1_random 810 0.82% 4
chrM 2998 18.09% 6
chrUn_GL000214v1 686 0.50% 3
chrUn_GL000216v2 16525 9.36% 43
chrUn_GL000218v1 240 0.15% 1
chrUn_GL000219v1 2217 1.24% 7
chrUn_GL000220v1 146 0.09% 1
chrUn_GL000224v1 2438 1.36% 9
chrUn_KI270435v1 280 0.30% 1
chrUn_KI270438v1 10592 9.41% 30
chrUn_KI270442v1 37391 9.54% 79
chrUn_KI270512v1 765 3.37% 2
chrUn_KI270519v1 1529 1.11% 4
chrUn_KI270589v1 2797 6.29% 4
chrUn_KI270591v1 764 13.18% 2
chrUn_KI270593v1 192 6.31% 1
chrUn_KI270742v1 238 0.13% 1
chrUn_KI270743v1 680 0.32% 2
chrUn_KI270744v1 2820 1.67% 5
chrUn_KI270751v1 1184 0.79% 2
chrUn_KI270754v1 494 1.23% 2
chrUn_KI270756v1 1492 1.87% 5
chrUn_KI270757v1 1601 2.25% 3
chrX 259093 0.17% 1007
chrY 82717 0.14% 276
3297 contigs with no values (121544868 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 35844 135 13081 291.3 242
global segment-length histogram

Files

Filename Size md5
ENCFF822CXT.bed.gz 661.51 KB 6998d9ae5256eebb0cb3a69fafe433c4
ENCFF822CXT.tabix.bed.gz 341.39 KB 70daa59ef6223013b6f113e9daa9d850
ENCFF822CXT.tabix.bed.gz.tbi 200.47 KB 3cb114070dfd46c0c1e65a10f3f82b0f
genomic_resource.yaml 1.97 KB ceaa46d5c70184f641cca9d99991ecdf
statistics/