Resource

Id Histone_ChIP-seq/ENCSR639RKScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR639RKS [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR639RKS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-04-30T04:18:20.262524+00:00
  • date_released: 2021-06-24
  • doi: 10.17989/ENCSR639RKS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR639RKS float

Histone_ChIP-seq_ENCSR639RKS
Histone_ChIP-seq ENCSR639RKS [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR639RKS [1.71, 14.6]
n
47,005,511
mean
4.76
sd
1.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 470055111.46% 54151
chr1 1697091 0.68% 1709
chr2 1594696 0.66% 1556
chr3 631149 0.32% 619
chr4 955169 0.50% 900
chr5 1240600 0.68% 1107
chr6 1726782 1.01% 1435
chr7 1232864 0.77% 1086
chr8 888888 0.61% 936
chr9 723311 0.52% 675
chr10 1375015 1.03% 1383
chr11 773561 0.57% 807
chr12 1097358 0.82% 1032
chr13 571449 0.50% 541
chr14 1265630 1.18% 1329
chr15 829818 0.81% 933
chr16 1038800 1.15% 1159
chr17 1380270 1.66% 1181
chr18 464096 0.58% 475
chr19 1107641 1.89% 1165
chr20 887665 1.38% 974
chr21 495341 1.06% 574
chr22 405950 0.80% 527
chrX 24622367 15.78% 32048
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54151 180 52341 868.05 626
global segment-length histogram

Files

Filename Size md5
ENCFF455OOQ.bed.gz 971.98 KB 4f3b3ac2630a45f56cba023bf774c0e7
ENCFF455OOQ.tabix.bed.gz 513.28 KB ea5578e6b662404bcd510a5781a27f02
ENCFF455OOQ.tabix.bed.gz.tbi 121.67 KB 55790c910b39c33ea5cca6f822f5b889
genomic_resource.yaml 2.26 KB 7241ee9b38ebd3ad865415783e583be8
statistics/