Resource
| Id | Histone_ChIP-seq/ENCSR639NMN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR639NMN [biosample_summary="Homo sapiens thyroid gland tissue male adult (54 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (54 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN612UHR|/analyses/ENCAN612UHR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF883DYM|/files/ENCFF883DYM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 32172723 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF596GFC|/files/ENCFF596GFC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 40800385 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR639NMN | float |
Histone_ChIP-seq_ENCSR639NMN |
Histone_ChIP-seq ENCSR639NMN [biosample_summary="Homo sapiens thyroid gland tissue male adult (54 years)" and target="H3K4me1"]
|
 |
[1.64, 4.56] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 432046 | 0.01% | 2727 |
| chr1 | 45366 | 0.02% | 272 |
| chr2 | 38317 | 0.02% | 239 |
| chr3 | 29525 | 0.01% | 186 |
| chr4 | 25251 | 0.01% | 166 |
| chr5 | 23461 | 0.01% | 150 |
| chr6 | 24474 | 0.01% | 165 |
| chr7 | 21328 | 0.01% | 131 |
| chr8 | 17475 | 0.01% | 109 |
| chr9 | 17240 | 0.01% | 113 |
| chr10 | 24698 | 0.02% | 158 |
| chr11 | 20263 | 0.02% | 130 |
| chr12 | 20890 | 0.02% | 129 |
| chr13 | 13542 | 0.01% | 88 |
| chr14 | 18898 | 0.02% | 111 |
| chr15 | 17141 | 0.02% | 104 |
| chr16 | 12235 | 0.01% | 80 |
| chr17 | 13400 | 0.02% | 89 |
| chr18 | 10810 | 0.01% | 70 |
| chr19 | 9724 | 0.02% | 63 |
| chr20 | 10921 | 0.02% | 73 |
| chr21 | 6923 | 0.01% | 40 |
| chr22 | 7531 | 0.01% | 49 |
| chr22_KI270733v1_random | 109 | 0.06% | 1 |
| chrUn_KI270333v1 | 129 | 4.78% | 1 |
| chrUn_KI270337v1 | 103 | 9.19% | 1 |
| chrUn_KI270466v1 | 580 | 47.04% | 3 |
| chrUn_KI270467v1 | 1258 | 32.09% | 2 |
| chrUn_KI270757v1 | 108 | 0.15% | 1 |
| chrX | 246 | <0.01% | 2 |
| chrY | 100 | <0.01% | 1 |
| 3336 contigs with no values (128817089 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 2727 | 100 | 785 | 158.43 | 145 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF958DTC.bed.gz | 48.93 KB | 3ca806ae9c7e01edb19ac45bcf55a907 |
| ENCFF958DTC.tabix.bed.gz | 28.18 KB | 24b291c14ad66f9a82f15d55963a380f |
| ENCFF958DTC.tabix.bed.gz.tbi | 30.95 KB | a30fc5a07ecdc38b51835db5d8dae564 |
| genomic_resource.yaml | 2.46 KB | 0ac070e35c65636d1d3debb45a4ae63b |
| statistics/ |