Resource

Id Histone_ChIP-seq/ENCSR639JPMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR639JPM [biosample_summary="Homo sapiens tibial nerve tissue male adult (37 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR639JPM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001323/
  • biosample_summary: Homo sapiens tibial nerve tissue male adult (37 years)
  • date_created: 2019-04-27T22:52:50.362008+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR639JPM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR639JPM float

Histone_ChIP-seq_ENCSR639JPM
Histone_ChIP-seq ENCSR639JPM [biosample_summary="Homo sapiens tibial nerve tissue male adult (37 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR639JPM [1.44, 23.7]
n
125,533,781
mean
5.44
sd
2.48

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1255337813.90% 114420
chr1 8475607 3.40% 8032
chr1_KI270706v1_random 1767 1.01% 4
chr1_KI270707v1_random 645 2.01% 1
chr1_KI270709v1_random 11586 17.33% 15
chr1_KI270712v1_random 1909 1.08% 3
chr2 9388067 3.88% 9167
chr2_KI270716v1_random 8585 5.58% 1
chr3 8009908 4.04% 7759
chr4 7833702 4.12% 7856
chr4_GL000008v2_random 5098 2.43% 2
chr5 8614849 4.75% 7844
chr5_GL000208v1_random 9027 9.74% 12
chr6 6660796 3.90% 6604
chr7 8435390 5.29% 7376
chr8 6510563 4.49% 6181
chr9 4613587 3.33% 4191
chr9_KI270719v1_random 7144 4.04% 12
chr9_KI270720v1_random 1380 3.53% 2
chr10 6319590 4.72% 5520
chr11 5799965 4.29% 5176
chr12 6422487 4.82% 5642
chr13 3317307 2.90% 3484
chr14 3711109 3.47% 3609
chr14_GL000009v2_random 2348 1.16% 6
chr14_GL000194v1_random 6220 3.25% 7
chr14_GL000225v1_random 105801 50.10% 65
chr14_KI270722v1_random 1673 0.86% 4
chr14_KI270723v1_random 4042 10.60% 3
chr14_KI270725v1_random 2227 1.29% 2
chr15 3229970 3.17% 2993
chr16 3738507 4.14% 3393
chr16_KI270728v1_random 2215 0.12% 6
chr17 2461618 2.96% 2274
chr17_GL000205v2_random 44910 24.20% 27
chr17_KI270729v1_random 119928 42.70% 38
chr17_KI270730v1_random 26164 23.25% 8
chr18 2677514 3.33% 2649
chr19 9504873 16.22% 4826
chr20 2563925 3.98% 2479
chr21 1601972 3.43% 1497
chr22 1404715 2.76% 1281
chr22_KI270732v1_random 9104 21.91% 13
chr22_KI270733v1_random 9830 5.47% 16
chr22_KI270735v1_random 9583 22.38% 9
chr22_KI270736v1_random 138396 76.08% 28
chr22_KI270737v1_random 600 0.58% 1
chr22_KI270738v1_random 40059 40.31% 17
chrUn_GL000195v1 356 0.19% 1
chrUn_GL000214v1 3412 2.48% 7
chrUn_GL000216v2 29121 16.49% 22
chrUn_GL000218v1 1065 0.66% 3
chrUn_GL000219v1 38111 21.27% 34
chrUn_GL000220v1 1052 0.65% 3
chrUn_GL000224v1 22498 12.52% 19
chrUn_KI270337v1 464 41.39% 1
chrUn_KI270429v1 586 43.06% 1
chrUn_KI270435v1 13668 14.70% 15
chrUn_KI270438v1 61618 54.77% 40
chrUn_KI270442v1 165510 42.22% 98
chrUn_KI270448v1 281 3.52% 1
chrUn_KI270465v1 424 23.90% 1
chrUn_KI270466v1 962 78.02% 1
chrUn_KI270467v1 1533 39.11% 1
chrUn_KI270468v1 1227 30.26% 2
chrUn_KI270507v1 2672 49.92% 6
chrUn_KI270508v1 1851 94.87% 2
chrUn_KI270509v1 525 22.65% 1
chrUn_KI270511v1 1763 21.69% 2
chrUn_KI270512v1 6239 27.50% 9
chrUn_KI270515v1 980 15.41% 1
chrUn_KI270517v1 1592 48.94% 1
chrUn_KI270519v1 29548 21.39% 39
chrUn_KI270522v1 824 14.52% 1
chrUn_KI270538v1 7259 7.95% 13
chrUn_KI270580v1 991 63.81% 1
chrUn_KI270583v1 1018 72.71% 1
chrUn_KI270584v1 1247 27.63% 2
chrUn_KI270587v1 762 25.67% 1
chrUn_KI270588v1 933 15.15% 2
chrUn_KI270589v1 3413 7.67% 2
chrUn_KI270590v1 3060 65.31% 3
chrUn_KI270591v1 3022 52.14% 2
chrUn_KI270742v1 2552 1.37% 6
chrUn_KI270744v1 9892 5.87% 14
chrUn_KI270746v1 2224 3.35% 4
chrUn_KI270747v1 1677 0.84% 2
chrUn_KI270749v1 3710 2.34% 3
chrUn_KI270750v1 958 0.64% 2
chrUn_KI270751v1 4562 3.03% 5
chrUn_KI270753v1 671 1.07% 1
chrUn_KI270754v1 367 0.91% 1
chrUn_KI270756v1 10508 13.20% 6
chrUn_KI270757v1 13689 19.21% 14
chrX 2726131 1.75% 3344
chrY 480991 0.84% 544
3271 contigs with no values (120357143 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 114420 200 90158 1097.13 753
global segment-length histogram

Files

Filename Size md5
ENCFF859FEF.bed.gz 2.28 MB a801635e0f26104a8ff34c0ee8a1110b
ENCFF859FEF.tabix.bed.gz 1.13 MB 0f9cf15aaea97d81f0b46e5d5c78658e
ENCFF859FEF.tabix.bed.gz.tbi 389.51 KB 1c8cc4ecba9d62c9ed03d270aa701c2b
genomic_resource.yaml 1.5 KB d675bac5d7f9d5e2c691a6f15c911b5a
statistics/