Resource

Id Histone_ChIP-seq/ENCSR638YPPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR638YPP [biosample_summary="Homo sapiens BLaER1 18 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR638YPP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 18 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:40.121932+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR638YPP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 18 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR638YPP float

Histone_ChIP-seq_ENCSR638YPP
Histone_ChIP-seq ENCSR638YPP [biosample_summary="Homo sapiens BLaER1 18 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR638YPP [1.33, 21.7]
n
138,391,820
mean
4.93
sd
2.43

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1383918204.30% 182258
chr1 9611820 3.86% 12739
chr1_KI270706v1_random 8720 4.98% 13
chr1_KI270707v1_random 2538 7.92% 6
chr1_KI270708v1_random 20634 16.16% 36
chr1_KI270709v1_random 18395 27.51% 19
chr1_KI270710v1_random 256 0.64% 1
chr1_KI270712v1_random 4031 2.29% 3
chr1_KI270713v1_random 408 1.00% 1
chr1_KI270714v1_random 1633 3.91% 2
chr2 10632000 4.39% 14552
chr2_KI270716v1_random 7937 5.16% 4
chr3 8631833 4.35% 12451
chr3_GL000221v1_random 4086 2.63% 12
chr4 7614353 4.00% 10741
chr4_GL000008v2_random 9046 4.31% 9
chr5 8638060 4.76% 11843
chr5_GL000208v1_random 2459 2.65% 7
chr6 6798561 3.98% 9754
chr7 8427960 5.29% 10919
chr8 9008488 6.21% 11100
chr9 5105429 3.69% 6944
chr9_KI270719v1_random 3682 2.08% 6
chr9_KI270720v1_random 643 1.65% 2
chr10 6695214 5.00% 8869
chr11 5371901 3.98% 7229
chr12 6410339 4.81% 8108
chr13 4218820 3.69% 6168
chr14 4055312 3.79% 5426
chr14_GL000009v2_random 5325 2.64% 13
chr14_GL000194v1_random 10540 5.50% 11
chr14_GL000225v1_random 85521 40.50% 123
chr14_KI270722v1_random 16076 8.28% 27
chr14_KI270723v1_random 4065 10.67% 4
chr14_KI270724v1_random 4490 11.35% 5
chr14_KI270725v1_random 4469 2.59% 4
chr15 3698334 3.63% 5018
chr15_KI270727v1_random 608 0.14% 2
chr16 3478326 3.85% 4279
chr16_KI270728v1_random 35728 1.91% 53
chr17 3093462 3.72% 3718
chr17_GL000205v2_random 7569 4.08% 13
chr17_KI270729v1_random 199419 71.01% 48
chr17_KI270730v1_random 30835 27.40% 15
chr18 3130290 3.89% 4397
chr19 8007031 13.66% 5922
chr20 2767689 4.29% 3657
chr21 2282915 4.89% 2836
chr22 1527296 3.01% 1947
chr22_KI270731v1_random 253 0.17% 1
chr22_KI270732v1_random 2442 5.88% 2
chr22_KI270733v1_random 18249 10.15% 36
chr22_KI270735v1_random 5485 12.81% 3
chr22_KI270736v1_random 118571 65.18% 70
chr22_KI270737v1_random 57350 55.23% 58
chr22_KI270738v1_random 55760 56.11% 33
chr22_KI270739v1_random 603 0.82% 1
chrUn_GL000195v1 1569 0.86% 4
chrUn_GL000213v1 520 0.32% 2
chrUn_GL000214v1 8546 6.21% 19
chrUn_GL000216v2 105497 59.74% 38
chrUn_GL000218v1 1718 1.07% 3
chrUn_GL000219v1 12578 7.02% 13
chrUn_GL000220v1 6963 4.30% 11
chrUn_GL000224v1 82112 45.70% 71
chrUn_KI270322v1 262 1.22% 1
chrUn_KI270330v1 408 24.70% 1
chrUn_KI270333v1 1199 44.42% 4
chrUn_KI270337v1 594 52.99% 1
chrUn_KI270435v1 12704 13.66% 23
chrUn_KI270438v1 72089 64.08% 23
chrUn_KI270442v1 122636 31.28% 69
chrUn_KI270448v1 333 4.17% 1
chrUn_KI270465v1 593 33.43% 1
chrUn_KI270467v1 255 6.51% 1
chrUn_KI270468v1 263 6.49% 1
chrUn_KI270508v1 1233 63.20% 3
chrUn_KI270509v1 477 20.58% 1
chrUn_KI270510v1 740 30.64% 2
chrUn_KI270512v1 8276 36.48% 10
chrUn_KI270515v1 1190 18.71% 3
chrUn_KI270516v1 768 59.08% 1
chrUn_KI270517v1 1249 38.40% 2
chrUn_KI270518v1 383 17.52% 1
chrUn_KI270519v1 40989 29.68% 56
chrUn_KI270529v1 332 17.48% 1
chrUn_KI270538v1 1222 1.34% 3
chrUn_KI270580v1 1483 95.49% 1
chrUn_KI270583v1 536 38.29% 2
chrUn_KI270584v1 1327 29.40% 2
chrUn_KI270588v1 345 5.60% 1
chrUn_KI270589v1 3373 7.58% 2
chrUn_KI270590v1 2615 55.82% 4
chrUn_KI270591v1 869 14.99% 1
chrUn_KI270741v1 2925 1.86% 6
chrUn_KI270742v1 1615 0.86% 4
chrUn_KI270743v1 4745 2.25% 9
chrUn_KI270744v1 18809 11.16% 25
chrUn_KI270746v1 535 0.80% 2
chrUn_KI270747v1 3895 1.96% 5
chrUn_KI270749v1 3994 2.52% 4
chrUn_KI270750v1 1030 0.69% 2
chrUn_KI270751v1 9166 6.08% 19
chrUn_KI270753v1 5455 8.67% 10
chrUn_KI270754v1 16740 41.65% 22
chrUn_KI270756v1 71578 89.93% 40
chrUn_KI270757v1 8095 11.36% 11
chrX 7583601 4.86% 12092
chrY 208132 0.36% 364
3258 contigs with no values (118697645 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 182258 250 66034 759.32 448
global segment-length histogram

Files

Filename Size md5
ENCFF532OFC.bed.gz 3.47 MB 7a1171150ffebcd7dbd33b24168325d5
ENCFF532OFC.tabix.bed.gz 1.72 MB cc8895055571d14e1137b723b497dd89
ENCFF532OFC.tabix.bed.gz.tbi 485.78 KB f2cb8a8a9f8dacd8d46b156e112c45ca
genomic_resource.yaml 3.12 KB b3c87f3b21dbe8139e6886bf20f0de28
statistics/