Resource

Id Histone_ChIP-seq/ENCSR636PINcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR636PIN [biosample_summary="Homo sapiens A549" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR636PIN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001086/
  • biosample_summary: Homo sapiens A549
  • date_created: 2016-05-25T23:23:55.899790+00:00
  • date_released: 2016-07-21
  • doi: 10.17989/ENCSR636PIN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR636PIN float

Histone_ChIP-seq_ENCSR636PIN

Histone_ChIP-seq ENCSR636PIN [biosample_summary="Homo sapiens A549" and target="H3K4me1"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR636PIN [1.96, 14.9]
n
47,337,834
mean
5.31
sd
1.72

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 473378341.47% 85124
chr1 3956790 1.59% 7500
chr1_KI270713v1_random 739 1.81% 3
chr2 4749630 1.96% 8089
chr3 2737534 1.38% 5236
chr4 1501502 0.79% 3296
chr5 2929203 1.61% 5017
chr6 2076871 1.22% 4462
chr7 2552937 1.60% 4502
chr8 2589907 1.78% 4427
chr9 2407093 1.74% 4089
chr10 2718571 2.03% 4709
chr11 2331366 1.73% 4131
chr12 2657719 1.99% 4735
chr13 548572 0.48% 1280
chr14 1447014 1.35% 2637
chr15 2054547 2.01% 3146
chr16 1505726 1.67% 2675
chr17 3076706 3.70% 4736
chr17_GL000205v2_random 1337 0.72% 2
chr18 756568 0.94% 1560
chr19 1210788 2.07% 2237
chr20 1702711 2.64% 2776
chr21 294089 0.63% 668
chr22 764268 1.50% 1484
chr22_KI270733v1_random 235 0.13% 1
chrUn_GL000195v1 3151 1.72% 4
chrX 759678 0.49% 1714
chrY 2582 <0.01% 8
3338 contigs with no values (128488081 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 85124 185 12061 556.1 387
global segment-length histogram

Files

Filename Size md5
ENCFF872XNX.bed.gz 1.34 MB 3bc459c23a6cf66cf42b5f98390a2ac4
ENCFF872XNX.tabix.bed.gz 865.84 KB 2938c01c3dfd1e8532ac24444254bd05
ENCFF872XNX.tabix.bed.gz.tbi 229.56 KB b603dd2136e548c965cb19c5c2dea0cf
genomic_resource.yaml 1.3 KB 7232c6f9345373d51620f8ba8eaa2a56
statistics/