Resource
| Id | Histone_ChIP-seq/ENCSR632QHJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR632QHJ [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (59 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (59 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN148OAH|/analyses/ENCAN148OAH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF808ZTG|/files/ENCFF808ZTG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 32320564 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR632QHJ | float |
Histone_ChIP-seq_ENCSR632QHJ |
Histone_ChIP-seq ENCSR632QHJ [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (59 years)" and target="H3K4me1"]
|
 |
[1.84, 34.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 133833298 | 4.16% | 168436 |
| chr1 | 12979519 | 5.21% | 15684 |
| chr1_KI270706v1_random | 193 | 0.11% | 1 |
| chr2 | 10659330 | 4.40% | 13466 |
| chr3 | 8731973 | 4.40% | 11143 |
| chr4 | 4761447 | 2.50% | 6874 |
| chr5 | 7215581 | 3.97% | 9326 |
| chr6 | 7288790 | 4.27% | 9628 |
| chr7 | 6373520 | 4.00% | 8486 |
| chr8 | 5568616 | 3.84% | 7425 |
| chr9 | 6013133 | 4.34% | 7335 |
| chr10 | 7169376 | 5.36% | 8865 |
| chr11 | 7593934 | 5.62% | 8820 |
| chr12 | 6609235 | 4.96% | 8352 |
| chr13 | 3223337 | 2.82% | 4286 |
| chr14 | 4517721 | 4.22% | 5514 |
| chr15 | 4714143 | 4.62% | 5790 |
| chr16 | 4818434 | 5.33% | 5753 |
| chr17 | 7137037 | 8.57% | 8218 |
| chr17_GL000205v2_random | 2745 | 1.48% | 4 |
| chr18 | 2585516 | 3.22% | 3572 |
| chr19 | 4870685 | 8.31% | 5946 |
| chr20 | 4123354 | 6.40% | 4992 |
| chr21 | 1538564 | 3.29% | 2081 |
| chr22 | 3246724 | 6.39% | 3617 |
| chrUn_GL000219v1 | 194 | 0.11% | 1 |
| chrUn_KI270742v1 | 187 | 0.10% | 1 |
| chrX | 2090010 | 1.34% | 3256 |
| 3339 contigs with no values (185577917 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 168436 | 175 | 22499 | 794.56 | 570 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF679BOT.bed.gz | 3.52 MB | 8139cc6a67b249fac2f5bb7198d45225 |
| ENCFF679BOT.tabix.bed.gz | 1.66 MB | a24d07ea265054172e436cfec8732554 |
| ENCFF679BOT.tabix.bed.gz.tbi | 375.46 KB | 9d109687271a30a9b0219816634f7801 |
| genomic_resource.yaml | 2.17 KB | c5ef1cb1147f781eb5a91848b71e99c0 |
| statistics/ |