Resource
| Id | Histone_ChIP-seq/ENCSR632OWD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR632OWD [biosample_summary="Homo sapiens urinary bladder tissue male adult (34 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN159OYG|/analyses/ENCAN159OYG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN159OYG|/analyses/ENCAN159OYG/} has in progress subobject document {1ae19051-8d7a-4602-a909-8ee044959dbd|/documents/1ae19051-8d7a-4602-a909-8ee044959dbd/} audit_warning: Processed alignments file {ENCFF746QLY|/files/ENCFF746QLY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 18988800 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR632OWD | float |
Histone_ChIP-seq_ENCSR632OWD |
Histone_ChIP-seq ENCSR632OWD [biosample_summary="Homo sapiens urinary bladder tissue male adult (34 years)" and target="H3K4me3"]
|
 |
[2.14, 59.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 30958709 | 0.96% | 24521 |
| chr1 | 3030237 | 1.22% | 2426 |
| chr2 | 2122451 | 0.88% | 1625 |
| chr3 | 1745274 | 0.88% | 1353 |
| chr4 | 1281286 | 0.67% | 962 |
| chr5 | 1495455 | 0.82% | 1147 |
| chr6 | 1796859 | 1.05% | 1412 |
| chr7 | 1564675 | 0.98% | 1278 |
| chr8 | 1167639 | 0.80% | 915 |
| chr9 | 1264854 | 0.91% | 990 |
| chr10 | 1335643 | 1.00% | 1042 |
| chr11 | 1699073 | 1.26% | 1297 |
| chr12 | 1613060 | 1.21% | 1244 |
| chr13 | 637160 | 0.56% | 503 |
| chr14 | 1023716 | 0.96% | 799 |
| chr15 | 1001652 | 0.98% | 770 |
| chr16 | 1217490 | 1.35% | 969 |
| chr17 | 1766310 | 2.12% | 1430 |
| chr18 | 545543 | 0.68% | 420 |
| chr19 | 1908423 | 3.26% | 1693 |
| chr20 | 780267 | 1.21% | 614 |
| chr21 | 288894 | 0.62% | 241 |
| chr22 | 673820 | 1.33% | 535 |
| chrX | 963708 | 0.62% | 829 |
| chrY | 35220 | 0.06% | 27 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 24521 | 165 | 11048 | 1262.54 | 1108 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF191IBA.bed.gz | 668.73 KB | fec6c6564de4cfa3c74426188463a6d7 |
| ENCFF191IBA.tabix.bed.gz | 285.09 KB | a8129e853f17730da0503dc6ccd68739 |
| ENCFF191IBA.tabix.bed.gz.tbi | 149.42 KB | 15e85674dac029b00584efd7a422c7e7 |
| genomic_resource.yaml | 2.21 KB | b2242e1858265b0314b58ee6dfe87381 |
| statistics/ |