Resource
| Id | Histone_ChIP-seq/ENCSR631RJR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR631RJR [biosample_summary="Homo sapiens H1" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN101UXC|/analyses/ENCAN101UXC/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF322LHI|/files/ENCFF322LHI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 13910242 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF108LUT|/files/ENCFF108LUT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 7353664 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR631RJR | float |
Histone_ChIP-seq_ENCSR631RJR |
Histone_ChIP-seq ENCSR631RJR [biosample_summary="Homo sapiens H1" and target="H3K4me1"]
|
 |
[1.92, 13.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 22205553 | 0.69% | 72907 |
| chr1 | 2491930 | 1.00% | 7813 |
| chr1_KI270713v1_random | 222 | 0.54% | 1 |
| chr2 | 1488274 | 0.61% | 5098 |
| chr3 | 1212866 | 0.61% | 4089 |
| chr4 | 678838 | 0.36% | 2445 |
| chr5 | 1036170 | 0.57% | 3487 |
| chr6 | 1087692 | 0.64% | 3754 |
| chr7 | 1031074 | 0.65% | 3497 |
| chr8 | 835350 | 0.58% | 2817 |
| chr9 | 1043306 | 0.75% | 3377 |
| chr10 | 1090767 | 0.82% | 3610 |
| chr11 | 1416253 | 1.05% | 4483 |
| chr12 | 1041812 | 0.78% | 3409 |
| chr13 | 415290 | 0.36% | 1496 |
| chr14 | 729615 | 0.68% | 2346 |
| chr15 | 884335 | 0.87% | 2854 |
| chr16 | 976379 | 1.08% | 3109 |
| chr17 | 1520383 | 1.83% | 4596 |
| chr18 | 397934 | 0.50% | 1400 |
| chr19 | 1009352 | 1.72% | 3266 |
| chr20 | 760371 | 1.18% | 2440 |
| chr21 | 220567 | 0.47% | 726 |
| chr22 | 707130 | 1.39% | 2230 |
| chr22_KI270733v1_random | 276 | 0.15% | 1 |
| chrUn_GL000195v1 | 600 | 0.33% | 3 |
| chrX | 127493 | 0.08% | 554 |
| chrY | 1274 | <0.01% | 6 |
| 3339 contigs with no values (128673672 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 72907 | 140 | 3170 | 304.57 | 244 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF558IKG.bed.gz | 1.2 MB | fde92ba19a36b3ed2e7705766b737ed0 |
| ENCFF558IKG.tabix.bed.gz | 666.81 KB | 21ee409b355c7c0665d53d359d8aef8e |
| ENCFF558IKG.tabix.bed.gz.tbi | 255.55 KB | 991f3c8ca022204381c88816730e9f5f |
| genomic_resource.yaml | 2.36 KB | 7afe846c9f218dccd2320edf55aabad7 |
| statistics/ |