Histone_ChIP-seq_ENCSR631BPS
Histone_ChIP-seq ENCSR631BPS [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR631BPS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR631BPS [biosamplesummary="Homo sapiens CD8-positive, alpha-beta T cell" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN249QTZ|/analyses/ENCAN249QTZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF908RAR|/files/ENCFF908RAR/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17814667 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF873LDM|/files/ENCFF873LDM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19485453 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF908RAR|/files/ENCFF908RAR/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF908RAR|/files/ENCFF908RAR/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.75. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF873LDM|/files/ENCFF873LDM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF873LDM|/files/ENCFF873LDM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.82. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR631BPS | float |
Histone_ChIP-seq_ENCSR631BPS |
Histone_ChIP-seq ENCSR631BPS [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell" and target="H3K4me1"]
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[1.58, 23.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF661YCD.bed.gz | 2.18 MB | d36ce01c68e708a334b5a8a9ec14fb6a |
| ENCFF661YCD.bed.gz.dvc | 101.0 B | dc0e7b11b09673e931656ee783518703 |
| ENCFF661YCD.tabix.bed.gz | 992.01 KB | 22c9fa5de4c560b4ceeb5682864e2d0f |
| ENCFF661YCD.tabix.bed.gz.dvc | 107.0 B | e502466deffe9b0a24b761b4bb74e343 |
| ENCFF661YCD.tabix.bed.gz.tbi | 226.25 KB | e82c9cc58ae3fd13c0736dbb5daa6a8d |
| ENCFF661YCD.tabix.bed.gz.tbi.dvc | 110.0 B | 4dd41f3115ce6466ea9e380fb100ba9b |
| genomic_resource.yaml | 5.16 KB | 52b08bb7300db34e2d223952fb3ee6dc |
| genomic_resource_original.yaml | 5.03 KB | 3817974348a268a70572dd9d520bcf9e |
| statistics/ |