Histone_ChIP-seq_ENCSR630DSN
Histone_ChIP-seq ENCSR630DSN [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR630DSN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR630DSN [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (61 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN493UGD|/analyses/ENCAN493UGD/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF374WKX|/files/ENCFF374WKX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF374WKX|/files/ENCFF374WKX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.74. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR630DSN | float |
Histone_ChIP-seq_ENCSR630DSN |
Histone_ChIP-seq ENCSR630DSN [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)" and target="H3K4me3"]
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[1.66, 46] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF049VHE.bed.gz | 626.25 KB | 4353334b5b6788dc908d51d4f5234ab5 |
| ENCFF049VHE.bed.gz.dvc | 100.0 B | 54ad9d189cc1a42b1a85bec6456fd5e9 |
| ENCFF049VHE.tabix.bed.gz | 267.7 KB | a0c2794c4dbb73f25708d936299160ba |
| ENCFF049VHE.tabix.bed.gz.dvc | 106.0 B | 23dbc27c12a59eabb07115e13ce4e9b4 |
| ENCFF049VHE.tabix.bed.gz.tbi | 151.14 KB | d6c8995117240b14a9dafe1e8d803982 |
| ENCFF049VHE.tabix.bed.gz.tbi.dvc | 110.0 B | 09260a87a5bcf4c0b890da1837236220 |
| genomic_resource.yaml | 2.79 KB | d66911324970057da79fbb88ca9058ab |
| genomic_resource_original.yaml | 2.65 KB | 0eec0c266accc1a26212be8e72b993a5 |
| statistics/ |