Resource

Id Histone_ChIP-seq/ENCSR629TDGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR629TDG [biosample_summary="Homo sapiens OCI-LY3" and target="H2AFZ"]
Description
Labels
  • accession: ENCSR629TDG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0006710/
  • biosample_summary: Homo sapiens OCI-LY3
  • date_created: 2014-02-20T05:43:19.438414+00:00
  • date_released: 2014-07-11
  • doi: 10.17989/ENCSR629TDG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H2AFZ

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR629TDG float

Histone_ChIP-seq_ENCSR629TDG
Histone_ChIP-seq ENCSR629TDG [biosample_summary="Homo sapiens OCI-LY3" and target="H2AFZ"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR629TDG [1.54, 17.9]
n
40,317,521
mean
4.87
sd
1.79

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 403175211.25% 71351
chr1 3368570 1.35% 5775
chr2 3314443 1.37% 5845
chr3 3361444 1.70% 5978
chr4 3171135 1.67% 5844
chr5 1651523 0.91% 2927
chr6 2380643 1.39% 4163
chr7 1808921 1.14% 3233
chr8 1676621 1.16% 3046
chr9 1376047 0.99% 2420
chr10 1155670 0.86% 2062
chr11 1951152 1.44% 3424
chr12 2067407 1.55% 3574
chr13 2093543 1.83% 3900
chr14 1347988 1.26% 2289
chr15 1191441 1.17% 1976
chr16 902396 1.00% 1645
chr17 1340819 1.61% 2377
chr17_GL000205v2_random 3678 1.98% 6
chr18 1663182 2.07% 2985
chr19 1280254 2.18% 2255
chr20 1041348 1.62% 1734
chr21 370250 0.79% 708
chr22 568195 1.12% 983
chr22_KI270733v1_random 625 0.35% 2
chrUn_GL000195v1 329 0.18% 1
chrUn_GL000219v1 2506 1.40% 5
chrUn_KI270467v1 816 20.82% 2
chrX 1178293 0.76% 2108
chrY 48282 0.08% 84
3337 contigs with no values (128345708 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 71351 185 4382 565.06 480
global segment-length histogram

Files

Filename Size md5
ENCFF243CQX.bed.gz 1.68 MB 4a182dd5b481555e14fd79b0e50f2089
ENCFF243CQX.tabix.bed.gz 760.67 KB f73c9925287edc304605b8b25a98080f
ENCFF243CQX.tabix.bed.gz.tbi 323.12 KB 4c55a13a710289b0b6733118b3609123
genomic_resource.yaml 1.86 KB 70e14bbc3da36c47817a26a4f9b314ef
statistics/