Resource
| Id | Histone_ChIP-seq/ENCSR629RJB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR629RJB [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (75 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN206FYP|/analyses/ENCAN206FYP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF236UAF|/files/ENCFF236UAF/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 32619984 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR629RJB | float |
Histone_ChIP-seq_ENCSR629RJB |
Histone_ChIP-seq ENCSR629RJB [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (75 years)" and target="H3K36me3"]
|
 |
[1.78, 16.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 50690077 | 1.58% | 83882 |
| chr1 | 5287780 | 2.12% | 8618 |
| chr2 | 3277357 | 1.35% | 5821 |
| chr3 | 2968535 | 1.50% | 5081 |
| chr4 | 1472113 | 0.77% | 2803 |
| chr5 | 2064518 | 1.14% | 3704 |
| chr6 | 2032736 | 1.19% | 3652 |
| chr7 | 2131266 | 1.34% | 3724 |
| chr8 | 1414134 | 0.97% | 2570 |
| chr9 | 2442240 | 1.76% | 3860 |
| chr10 | 1962760 | 1.47% | 3497 |
| chr11 | 3018954 | 2.23% | 4717 |
| chr12 | 2924818 | 2.19% | 4615 |
| chr13 | 756698 | 0.66% | 1483 |
| chr14 | 1620606 | 1.51% | 2818 |
| chr15 | 1849281 | 1.81% | 3163 |
| chr16 | 2791625 | 3.09% | 4272 |
| chr17 | 3451225 | 4.15% | 5318 |
| chr18 | 601726 | 0.75% | 1190 |
| chr19 | 3834940 | 6.54% | 5527 |
| chr20 | 1863727 | 2.89% | 2939 |
| chr21 | 665274 | 1.42% | 1079 |
| chr22 | 1825799 | 3.59% | 2594 |
| chrX | 431965 | 0.28% | 837 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 83882 | 160 | 9370 | 604.3 | 467 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF727KZF.bed.gz | 1.56 MB | 7bdc6463dd13ad8dbcda4af63ad27594 |
| ENCFF727KZF.tabix.bed.gz | 807.61 KB | 599c5adfa00fd452f9efc7f0e95ec388 |
| ENCFF727KZF.tabix.bed.gz.tbi | 167.24 KB | eb3e490610040f4c1e5d1db2202ea86e |
| genomic_resource.yaml | 2.07 KB | c4bf691d07cd57811c40aff9f15d3f11 |
| statistics/ |