Histone_ChIP-seq_ENCSR628CTX
Histone_ChIP-seq ENCSR628CTX [biosample_summary="Homo sapiens muscle layer of duodenum tissue male adult (59 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR628CTX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR628CTX [biosamplesummary="Homo sapiens muscle layer of duodenum tissue male adult (59 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN385BWO|/analyses/ENCAN385BWO/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF587QOH|/files/ENCFF587QOH/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 29925865 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF587QOH|/files/ENCFF587QOH/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF587QOH|/files/ENCFF587QOH/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.02. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR628CTX | float |
Histone_ChIP-seq_ENCSR628CTX |
Histone_ChIP-seq ENCSR628CTX [biosample_summary="Homo sapiens muscle layer of duodenum tissue male adult (59 years)" and target="H3K4me1"]
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[1.66, 9.73] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF395OSQ.bed.gz | 752.8 KB | 80bb30f5d2ae13478976181355224314 |
| ENCFF395OSQ.bed.gz.dvc | 100.0 B | 29710fc079f0029ae97e5e4c1ccb07ad |
| ENCFF395OSQ.tabix.bed.gz | 383.59 KB | 5eee56d41ba03e9d886ab0dfdac84b15 |
| ENCFF395OSQ.tabix.bed.gz.dvc | 106.0 B | 9e45c8b44f354fc43b2281192d65b0e3 |
| ENCFF395OSQ.tabix.bed.gz.tbi | 175.38 KB | 8f7371125a1e0ceeeb7a297b5825e9be |
| ENCFF395OSQ.tabix.bed.gz.tbi.dvc | 110.0 B | d20c9e52752df3f7c7fe6f86a06ba368 |
| genomic_resource.yaml | 3.33 KB | 2a2c593140cad4148b39e94caba55e38 |
| genomic_resource_original.yaml | 3.18 KB | eb6b13f34322335d83b4b48ae4ec9379 |
| statistics/ |